Genome-wide association study identified candidate SNPs and genes associated with hypoxia tolerance in large yellow croaker (Larimichthys crocea)

Molecular Characterization and Response of Prolyl Hydroxylase Domain (PHD) Genes to Hypoxia Stress in Hypophthalmichthys molitrix

(2022) Xiaohui Li et al.   Animals

How Selective Breeding Has Changed the Morphology of the American Mink (Neovison vison)—A Comparative Analysis of Farm and Feral Animals

(2021) Anna Mucha et al.   Animals

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated tool for Genome-Wide Association Study

(2021) Lilin Yin et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The transcriptomic responses of Atlantic salmon (Salmo salar) to high temperature stress alone, and in combination with moderate hypoxia

(2021) Anne Beemelmanns et al.   BMC GENOMICS

Identification of candidate SNPs and genes associated with anti-RGNNV using GWAS in the red-spotted grouper, Epinephelus akaara

(2021) Min Yang et al.   FISH & SHELLFISH IMMUNOLOGY

Muscle Glycogen Phosphorylase and Its Functional Partners in Health and Disease

(2021) Marta Migocka-Patrzałek et al.   Cells

GWAS identified candidate variants and genes associated with acute heat tolerance of large yellow croaker

(2021) Yidi Wu et al.   AQUACULTURE

GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction

(2021) Jiabo Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Genome-wide association study reveals multiple novel SNPs and putative candidate genes associated with low oxygen tolerance in golden pompano Trachinotus ovatus (Linnaeus 1758)

(2021) Li-Ze San et al.   AQUACULTURE

Genomic features of common carp that are relevant for resistance against Aeromonas hydrophila infection

(2021) Yanliang Jiang et al.   AQUACULTURE

Genome-wide association analysis on host resistance against the rotten body disease in a naturally infected population of large yellow croaker Larimichthys crocea

(2021) Zhen Xi Zhang et al.   AQUACULTURE

A molecular insight into the resistance of yellow drum to Vibrio harveyi by genome-wide association analysis

(2021) Shuai Luo et al.   AQUACULTURE

Genetics Responses to Hypoxia and Reoxygenation Stress in Larimichthys crocea Revealed via Transcriptome Analysis and Weighted Gene Co-Expression Network

(2021) Yibo Zhang et al.   Animals

The role of PSMB5 in sodium arsenite–induced oxidative stress in L-02 cells

(2020) Ying Lv et al.   CELL STRESS & CHAPERONES

Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B

(2020) Elisa Vilardo et al.   NUCLEIC ACIDS RESEARCH

Genetics of growth and survival under chronic heat stress and trade-offs with growth- and robustness-related traits in rainbow trout

(2020) Jousepth Gallardo-Hidalgo et al.   AQUACULTURE

Research advances in the genomics and applications for molecular breeding of aquaculture animals

(2020) Xinxin You et al.   AQUACULTURE

Methylation of the central transcriptional regulator KLF4 by PRMT5 is required for DNA end resection and recombination

(2020) Cintia Checa-Rodríguez et al.   DNA REPAIR

tRNA methyltransferase 10 homologue A (TRMT10A) mutation in a Chinese patient with diabetes, insulin resistance, intellectual deficiency and microcephaly

(2020) Hu Lin et al.   BMJ Open Diabetes Research & Care

Genomic selection for parasitic ciliate Cryptocaryon irritans resistance in large yellow croaker

(2020) Ji Zhao et al.   AQUACULTURE

Genome-Wide Association Study Identifies Genomic Loci of Sex Determination and Gonadosomatic Index Traits in Large Yellow Croaker (Larimichthys crocea)

(2020) Huanling Lin et al.   MARINE BIOTECHNOLOGY

Genome-wide association improves genomic selection for ammonia tolerance in the orange-spotted grouper (Epinephelus coioides)

(2020) Xinxin Shan et al.   AQUACULTURE

Fish response to hypoxia stress: growth, physiological, and immunological biomarkers

(2019) Mohsen Abdel-Tawwab et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

PRMT5 enhances tumorigenicity and glycolysis in pancreatic cancer via the FBW7/cMyc axis

(2019) Yi Qin et al.   Cell Communication and Signaling

Genome resequencing of the orange-spotted grouper (Epinephelus coioides) for a genome-wide association study on ammonia tolerance

(2019) Tengfei Xu et al.   AQUACULTURE

Transcriptome analysis reveals new insights into immune response to hypoxia challenge of large yellow croaker (Larimichthys crocea)

(2019) Yinnan Mu et al.   FISH & SHELLFISH IMMUNOLOGY

Inhibition of PRMT5 Attenuates Oxidative Stress-Induced Pyroptosis via Activation of the Nrf2/HO-1 Signal Pathway in a Mouse Model of Renal Ischemia-Reperfusion Injury

(2019) Changhui Diao et al.   Oxidative Medicine and Cellular Longevity

Screening of hypoxia-tolerance related SNP in a selectively bred F5 strain of blunt snout bream (Megalobrama amblycephala)

(2019) Dong-Dong Wang et al.   AQUACULTURE

The effect of muscle glycogen phosphorylase (Pygm) knockdown on zebrafish morphology

(2019) Marta Migocka-Patrzałek et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

The molecular characterization, expression pattern and alternative initiation of Megalobrama amblycephala Hif prolyl hydroxylase Phd1

(2018) Nan Chen et al.   GENE

BLINK: A package for the next level of Genome-Wide association studies with both individuals and markers in the millions

(2018) Meng Huang et al.   GigaScience

Transcriptome analysis and discovery of genes involved in immune pathways in large yellow croaker ( Larimichthys crocea ) under high stocking density stress

(2017) Peng Sun et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish

(2017) Xiaoxiao Zhong et al.   MARINE BIOTECHNOLOGY

PRMT5-Dependent Methylation of the TIP60 Coactivator RUVBL1 Is a Key Regulator of Homologous Recombination

(2017) Thomas L. Clarke et al.   MOLECULAR CELL

Negative genetic correlation between resistance against Piscirickettsia salmonis and harvest weight in coho salmon (Oncorhynchus kisutch)

(2016) José M. Yáñez et al.   AQUACULTURE

Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)

(2016) Linsong Dong et al.   BMC GENOMICS

Multiple across-strain and within-strain QTLs suggest highly complex genetic architecture for hypoxia tolerance in channel catfish

(2016) Xiaozhu Wang et al.   MOLECULAR GENETICS AND GENOMICS

Heritability of Boldness and Hypoxia Avoidance in European Seabass, Dicentrarchus labrax

(2016) Sébastien Ferrari et al.   PLoS One

The combined effect of hypoxia and nutritional status on metabolic and ionoregulatory responses of common carp (Cyprinus carpio)

(2015) Sofie Moyson et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Iron Regulatory Protein 1 Suppresses Hypoxia-Induced Iron Uptake Proteins Expression and Decreases Iron Levels in HepG2 Cells

(2015) Chun-Ming Cheng et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Ameliorating replicative senescence of human bone marrow stromal cells by PSMB5 overexpression

(2014) Li Lu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TRMT10A dysfunction is associated with abnormalities in glucose homeostasis, short stature and microcephaly

(2014) David Gillis et al.   JOURNAL OF MEDICAL GENETICS

Assessment of oxidative damage to DNA, transcriptional expression of key genes, lipid peroxidation and histopathological changes in carp Cyprinus carpio L. following exposure to chronic hypoxic and subsequent recovery in normoxic conditions

(2014) Sanaa A. Mustafa et al.   MUTAGENESIS

MYBPC1 mutations impair skeletal muscle function in zebrafish models of arthrogryposis

(2013) Kyungsoo Ha et al.   HUMAN MOLECULAR GENETICS

Effects of fish farming on phytoplankton community under the thermal stress caused by a power plant in a eutrophic, semi-enclosed bay: Induce toxic dinoflagellate (Prorocentrum minimum) blooms in cold seasons

(2013) Zhibing Jiang et al.   MARINE POLLUTION BULLETIN

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease

(2013) Jean-Charles Lambert et al.   NATURE GENETICS

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Five Years of GWAS Discovery

(2012) Peter M. Visscher et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Protein arginine methyltransferase 5 is an essential component of the hypoxia-inducible factor 1 signaling pathway

(2012) Ji-Hong Lim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Untangling the positive genetic correlation between rainbow trout growth and survival

(2012) Harri Vehviläinen et al.   Evolutionary Applications

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Calcium/Calmodulin-dependent Protein Kinase Kinase 2 Regulates Macrophage-mediated Inflammatory Responses

(2012) Luigi Racioppi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Calcium/Calmodulin-dependent Protein Kinase Kinase 2: Roles in Signaling and Pathophysiology

(2012) Luigi Racioppi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Genetic correlations between growth rate and resistance to vibriosis and viral nervous necrosis in Atlantic cod (Gadus morhua L.)

(2011) Rama Bangera et al.   AQUACULTURE

Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4

(2011)   NATURE GENETICS

Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application

(2010) Rita M. Cantor et al.   AMERICAN JOURNAL OF HUMAN GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Hypoxia, hypoxia-inducible factors (HIF), HIF hydroxylases and oxygen sensing

(2009) James D. Webb et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease

(2009) Wataru Satake et al.   NATURE GENETICS

The functional duality of iron regulatory protein 1

(2008) Karl Volz   CURRENT OPINION IN STRUCTURAL BIOLOGY