The advantages and limitations of trait analysis with GWAS: a review

GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis

(2013) U. Seren et al.   PLANT CELL

Genetic Architecture of Skin and Eye Color in an African-European Admixed Population

(2013) Sandra Beleza et al.   PLoS Genetics

SELECTION ON VARIANCE-CONTROLLING GENES: ADAPTABILITY OR STABILITY

(2012) Mats E. Pettersson et al.   EVOLUTION

Incorporating Genotype Uncertainties Into the Genotypic TDT for Main Effects and Gene-Environment Interactions

(2012) Margaret A. Taub et al.   GENETIC EPIDEMIOLOGY

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Improved linear mixed models for genome-wide association studies

(2012) Jennifer Listgarten et al.   NATURE METHODS

Genome-wide association studies in mice

(2012) Jonathan Flint et al.   NATURE REVIEWS GENETICS

Genome-Wide Association Mapping in Tomato ( Solanum lycopersicum ) Is Possible Using Genome Admixture of Solanum lycopersicum var. cerasiforme

(2012) Nicolas Ranc et al.   G3-Genes Genomes Genetics

Genome-Wide Association Studies Identify Heavy Metal ATPase3 as the Primary Determinant of Natural Variation in Leaf Cadmium in Arabidopsis thaliana

(2012) Dai-Yin Chao et al.   PLoS Genetics

A Genome-Wide Association Study Identifies Variants Underlying the Arabidopsis thaliana Shade Avoidance Response

(2012) Daniele L. Filiault et al.   PLoS Genetics

Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12

(2011) H. G. Olsen et al.   ANIMAL GENETICS

EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards

(2011) G. Hemani et al.   BIOINFORMATICS

Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs

(2011) T. Kam-Thong et al.   BIOINFORMATICS

Comparing the adaptive landscape across trait types: larger QTL effect size in traits under biotic selection

(2011) Allison M Louthan et al.   BMC EVOLUTIONARY BIOLOGY

The use of imputed values in the meta-analysis of genome-wide association studies

(2011) Shuo Jiao et al.   GENETIC EPIDEMIOLOGY

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Knowledge-Driven Multi-Locus Analysis Reveals Gene-Gene Interactions Influencing HDL Cholesterol Level in Two Independent EMR-Linked Biobanks

(2011) Stephen D. Turner et al.   PLoS One

Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population

(2011) X. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars

(2011) Minghui Wang et al.   THEORETICAL AND APPLIED GENETICS

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Synthetic Associations Created by Rare Variants Do Not Explain Most GWAS Results

(2011) Naomi R. Wray et al.   PLOS BIOLOGY

Rare Variant Association Analysis Methods for Complex Traits

(2010) Jennifer Asimit et al.   Annual Review of Genetics

Conditions Under Which Genome-Wide Association Studies Will be Positively Misleading

(2010) A. Platt et al.   GENETICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Gene–environment-wide association studies: emerging approaches

(2010) Duncan Thomas   NATURE REVIEWS GENETICS

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare Variants Create Synthetic Genome-Wide Associations

(2010) Samuel P. Dickson et al.   PLOS BIOLOGY

A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes

(2010) Gaurav Bhatia et al.   PLoS Computational Biology

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Genetic architecture of quantitative traits in mice, flies, and humans

(2009) J. Flint et al.   GENOME RESEARCH

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines

(2009) Sureshkumar Balasubramanian et al.   PLoS One

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

(2009) Paula X. Kover et al.   PLoS Genetics

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

Methods for Detecting Associations with Rare Variants for Common Diseases: Application to Analysis of Sequence Data

(2008) Bingshan Li et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Common and rare variants in multifactorial susceptibility to common diseases

(2008) Walter Bodmer et al.   NATURE GENETICS

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS