A transformation clustering algorithm and its application in polyribosomes structural profiling

Towards Visual Proteomics at High Resolution

(2021) Felix J.B. Bäuerlein et al.   JOURNAL OF MOLECULAR BIOLOGY

Montage cryo-electron tomography: imaging a large field-of-view without sacrificing resolution

(2021) Ariana Peck et al.   MICROSCOPY AND MICROANALYSIS

Functional Cyclization of Eukaryotic mRNAs

(2020) Olga Alekhina et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Charting the native architecture of Chlamydomonas thylakoid membranes with single-molecule precision

(2020) Wojciech Wietrzynski et al.   eLife

STOPGAP: A Software Package for Subtomogram Averaging and Refinement

(2020) William Wan et al.   MICROSCOPY AND MICROANALYSIS

EDF1 coordinates cellular responses to ribosome collisions

(2020) Niladri K Sinha et al.   eLife

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Protein denaturation at the air-water interface and how to prevent it

(2019) Edoardo D'Imprima et al.   eLife

Real-time cryo-electron microscopy data preprocessing with Warp

(2019) Dimitry Tegunov et al.   NATURE METHODS

Direct visualization of degradation microcompartments at the ER membrane

(2019) Sahradha Albert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Situ Structure of Neuronal C9orf72 Poly-GA Aggregates Reveals Proteasome Recruitment

(2018) Qiang Guo et al.   CELL

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1

(2018) Bertrand Beckert et al.   Nature Microbiology

Ribosome Collision Is Critical for Quality Control during No-Go Decay

(2017) Carrie L. Simms et al.   MOLECULAR CELL

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Proteasomes tether to two distinct sites at the nuclear pore complex

(2017) Sahradha Albert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In situ structural studies of tripeptidyl peptidase II (TPPII) reveal spatial association with proteasomes

(2017) Yoshiyuki Fukuda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

(2016) Tanmay A M Bharat et al.   Nature Protocols

Visualizing the molecular sociology at the HeLa cell nuclear periphery

(2016) J. Mahamid et al.   SCIENCE

Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail?

(2016) Martin Beck et al.   TRENDS IN CELL BIOLOGY

Three distinct ribosome assemblies modulated by translation are the building blocks of polysomes

(2015) Gabriella Viero et al.   JOURNAL OF CELL BIOLOGY

Organization of the mitochondrial translation machinery studied in situ by cryoelectron tomography

(2015) Stefan Pfeffer et al.   Nature Communications

Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement

(2014) Tatyana V. Budkevich et al.   CELL

Robust membrane detection based on tensor voting for electron tomography

(2014) Antonio Martinez-Sanchez et al.   JOURNAL OF STRUCTURAL BIOLOGY

Formation of circular polyribosomes on eukaryotic mRNA without cap-structure and poly(A)-tail: a cryo electron tomography study

(2014) Zhanna A. Afonina et al.   NUCLEIC ACIDS RESEARCH

Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae

(2014) Yuanhui Mao et al.   NUCLEIC ACIDS RESEARCH

The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes

(2014) Alexander G. Myasnikov et al.   Nature Communications

Structural Basis of the Translational Elongation Cycle

(2013) Rebecca M. Voorhees et al.   Annual Review of Biochemistry

Topology of mRNA chain in isolated eukaryotic double-row polyribosomes

(2013) Zh. A. Afonina et al.   BIOCHEMISTRY-MOSCOW

Cryo-electron tomography: The challenge of doing structural biology in situ

(2013) Vladan Lučić et al.   JOURNAL OF CELL BIOLOGY

Visualizing Compaction of Polysomes in Bacteria

(2013) Nicolas Cougot et al.   JOURNAL OF MOLECULAR BIOLOGY

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

(2013) Yiliang Ding et al.   NATURE

Prevention of overfitting in cryo-EM structure determination

(2012) Sjors H W Scheres et al.   NATURE METHODS

Structure and 3D Arrangement of Endoplasmic Reticulum Membrane-Associated Ribosomes

(2012) Stefan Pfeffer et al.   STRUCTURE

Characterization of hibernating ribosomes in mammalian cells

(2011) Dawid Krokowski et al.   CELL CYCLE

PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis

(2011) Thomas Hrabe et al.   JOURNAL OF STRUCTURAL BIOLOGY

Micromachining tools and correlative approaches for cellular cryo-electron tomography

(2010) Alexander Rigort et al.   JOURNAL OF STRUCTURAL BIOLOGY

The Three-Dimensional Organization of Polyribosomes in Intact Human Cells

(2010) Florian Brandt et al.   MOLECULAR CELL

The Native 3D Organization of Bacterial Polysomes

(2009) Florian Brandt et al.   CELL

HELFIT: Helix fitting by a total least squares method

(2008) Purevjav Enkhbayar et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA

(2008) Gelina S. Kopeina et al.   NUCLEIC ACIDS RESEARCH

Divergent Regulation of Protein Synthesis in the Cytosol and Endoplasmic Reticulum Compartments of Mammalian Cells

(2007) Samuel B. Stephens et al.   MOLECULAR BIOLOGY OF THE CELL