Post mortem mapping of connectional anatomy for the validation of diffusion MRI

Use of computational fluid dynamics for 3D fiber tract visualization on human high-thickness histological slices: histological mesh tractography

(2021) Eduardo Joaquim Lopes Alho et al.   Brain Structure & Function

DeepACSON automated segmentation of white matter in 3D electron microscopy

(2021) Ali Abdollahzadeh et al.   Communications Biology

Synchrotron X‐ray micro‐CT as a validation dataset for diffusion MRI in whole mouse brain

(2021) Scott Trinkle et al.   MAGNETIC RESONANCE IN MEDICINE

Can MRI measure myelin? Systematic review, qualitative assessment, and meta-analysis of studies validating microstructural imaging with myelin histology

(2021) Alberto Lazari et al.   NEUROIMAGE

A 48-channel receive array coil for mesoscopic diffusion-weighted MRI of ex vivo human brain on the 3 T connectome scanner

(2021) Alina Scholz et al.   NEUROIMAGE

The ventral pathway of the human brain: A continuous association tract system

(2021) Cornelius Weiller et al.   NEUROIMAGE

Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome

(2021) Susie Y. Huang et al.   NEUROIMAGE

High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation

(2021) Robert Jones et al.   NEUROIMAGE

Diffusion MRI and anatomic tracing in the same brain reveal common failure modes of tractography

(2021) Giorgia Grisot et al.   NEUROIMAGE

Cellular and Molecular Probing of Intact Human Organs

(2020) Shan Zhao et al.   CELL

Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain

(2020) Robert Jones et al.   NEUROIMAGE

Noninvasive quantification of axon radii using diffusion MRI

(2020) Jelle Veraart et al.   eLife

Combined Diffusion Tensor Imaging and Quantitative Susceptibility Mapping Discern Discrete Facets of White Matter Pathology Post-injury in the Rodent Brain

(2020) Neha Soni et al.   Frontiers in Neurology

Pyramid-Shape Crossings and Intercrossing Fibers Are Key Elements for Construction of the Neural Network in the Superficial White Matter of the Human Cerebrum

(2020) Harumichi Shinohara et al.   CEREBRAL CORTEX

The ventral attention network: the mirror of the language network in the right brain hemisphere

(2020) Florian Bernard et al.   JOURNAL OF ANATOMY

Axon Diameter Index Estimation Independent of Fiber Orientation Distribution Using High-Gradient Diffusion MRI

(2020) Qiuyun Fan et al.   NEUROIMAGE

SANDI: A compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI

(2020) Marco Palombo et al.   NEUROIMAGE

The impact of realistic axonal shape on axon diameter estimation using diffusion MRI

(2020) Hong-Hsi Lee et al.   NEUROIMAGE

Revealing architectural order with quantitative label-free imaging and deep learning

(2020) Syuan-Ming Guo et al.   eLife

A time-dependent diffusion MRI signature of axon caliber variations and beading

(2020) Hong-Hsi Lee et al.   Communications Biology

Challenges for biophysical modeling of microstructure

(2020) Ileana O. Jelescu et al.   JOURNAL OF NEUROSCIENCE METHODS

Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging

(2020) Abib Alimi et al.   MEDICAL IMAGE ANALYSIS

White Matter Dissection of the Fetal Brain

(2020) Bianca Horgos et al.   Frontiers in Neuroanatomy

Anatomy of nerve fiber bundles at micrometer-resolution in the vervet monkey visual system

(2020) Hiromasa Takemura et al.   eLife

Oxytocin, but not arginine-vasopressin neurons project from the hypothalamus to amygdala in human: DiI-based tracing study in postmortem brain

(2020) Elena V. Sivukhina et al.   JOURNAL OF CHEMICAL NEUROANATOMY

Towards in vivo g-ratio mapping using MRI: Unifying myelin and diffusion imaging

(2020) Siawoosh Mohammadi et al.   JOURNAL OF NEUROSCIENCE METHODS

Assessment of the structural complexity of diffusion MRI voxels using 3D electron microscopy in the rat brain

(2020) Raimo A. Salo et al.   NEUROIMAGE

Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain

(2020) C. Leuze et al.   NEUROIMAGE

Intra-axonal diffusivity in brain white matter

(2019) Bibek Dhital et al.   NEUROIMAGE

Detecting Microglial Density With Quantitative Multi-Compartment Diffusion MRI

(2019) Sue Y. Yi et al.   Frontiers in Neuroscience

Searching for the neurite density with diffusion MRI: Challenges for biophysical modeling

(2019) Björn Lampinen et al.   HUMAN BRAIN MAPPING

Anatomy and White Matter Connections of the Inferior Frontal Gyrus

(2019) Robert G. Briggs et al.   CLINICAL ANATOMY

Uncovering the inferior fronto-occipital fascicle and its topological organization in non-human primates: the missing connection for language evolution

(2019) Silvio Sarubbo et al.   Brain Structure & Function

Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI

(2019) Hong-Hsi Lee et al.   Brain Structure & Function

White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis

(2019) J. Mollink et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

Joint modelling of diffusion MRI and microscopy

(2019) Amy FD. Howard et al.   NEUROIMAGE

High-gradient diffusion MRI reveals distinct estimates of axon diameter index within different white matter tracts in the in vivo human brain

(2019) Susie Y. Huang et al.   Brain Structure & Function

Validation of structural brain connectivity networks: The impact of scanning parameters

(2019) Karen S. Ambrosen et al.   NEUROIMAGE

In-vivo and ex-vivo optical clearing methods for biological tissues: review

(2019) Irene Costantini et al.   Biomedical Optics Express

White Matter Topographic Anatomy Applied to Temporal Lobe Surgery

(2019) Ana Flores-Justa et al.   World Neurosurgery

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

(2019) Xiaoyin Chen et al.   CELL

Ultra-high resolution and multi-shell diffusion MRI of intact ex vivo human brains using kT-dSTEAM at 9.4T

(2019) F.J. Fritz et al.   NEUROIMAGE

7 Tesla MRI of the ex vivo human brain at 100 micron resolution

(2019) Brian L. Edlow et al.   Scientific Data

Anatomy and white matter connections of the superior frontal gyrus

(2019) Robert G. Briggs et al.   CLINICAL ANATOMY

Time‐dependent diffusion in undulating thin fibers: Impact on axon diameter estimation

(2019) Jan Brabec et al.   NMR IN BIOMEDICINE

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology

(2018) Menuka Pallebage-Gamarallage et al.   BMC NEUROSCIENCE

When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity

(2018) Dogu Baran Aydogan et al.   Brain Structure & Function

Functional segmentation of the anterior limb of the internal capsule: linking white matter abnormalities to specific connections.

(2018) Ziad Safadi et al.   JOURNAL OF NEUROSCIENCE

as -PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity

(2018) Hui Wang et al.   NEUROIMAGE

High resolution anatomical and quantitative MRI of the entire human occipital lobe ex vivo at 9.4 T

(2018) S. Sengupta et al.   NEUROIMAGE

Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution

(2018) Sharib Ali et al.   NEUROIMAGE

Experimental studies of g-ratio MRI in ex vivo mouse brain

(2018) Kathryn L. West et al.   NEUROIMAGE

Histological validation of diffusion MRI fiber orientation distributions and dispersion

(2018) Kurt G. Schilling et al.   NEUROIMAGE

Validation strategies for the interpretation of microstructure imaging using diffusion MRI

(2018) Tim B. Dyrby et al.   NEUROIMAGE

Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances

(2018) Alard Roebroeck et al.   NMR IN BIOMEDICINE

In vivo diffusion MRI detects early spinal cord axonal pathology in a mouse model of amyotrophic lateral sclerosis

(2018) Rodolfo G. Gatto et al.   NMR IN BIOMEDICINE

Voxel-wise comparisons of cellular microstructure and diffusion-MRI in mouse hippocampus using 3D Bridging of Optically-clear histology with Neuroimaging Data (3D-BOND)

(2018) H. B. Stolp et al.   Scientific Reports

Photogrammetry of the Human Brain: A Novel Method for Three-Dimensional Quantitative Exploration of the Structural Connectivity in Neurosurgery and Neurosciences

(2018) Alessandro De Benedictis et al.   World Neurosurgery

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

(2018) Juan Eugenio Iglesias et al.   MEDICAL IMAGE ANALYSIS

Derivation of Fiber Orientations From Oblique Views Through Human Brain Sections in 3D-Polarized Light Imaging

(2018) Daniel Schmitz et al.   Frontiers in Neuroanatomy

Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann’s area 32 and area 21

(2018) Caroline Magnain et al.   Brain Structure & Function

Ex vivo visualization of the trigeminal pathways in the human brainstem using 11.7T diffusion MRI combined with microscopy polarized light imaging

(2018) Dylan J. H. A. Henssen et al.   Brain Structure & Function

Anatomical accuracy of standard-practice tractography algorithms in the motor system - A histological validation in the squirrel monkey brain

(2018) Kurt G. Schilling et al.   MAGNETIC RESONANCE IMAGING

Visualization of myelinated fiber bundles orientation during brain slice preparation by reflection polarized light microscopy

(2018) Norio Takata et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Protection of tissue physicochemical properties using polyfunctional crosslinkers

(2018) Young-Gyun Park et al.   NATURE BIOTECHNOLOGY

Limits to anatomical accuracy of diffusion tractography using modern approaches

(2018) Kurt G. Schilling et al.   NEUROIMAGE

The Nomenclature of Human White Matter Association Pathways: Proposal for a Systematic Taxonomic Anatomical Classification

(2018) Emmanuel Mandonnet et al.   Frontiers in Neuroanatomy

Multi-Beam Scanning Electron Microscopy for High-Throughput Imaging in Connectomics Research

(2018) Anna Lena Eberle et al.   Frontiers in Neuroanatomy

Klingler’s method of brain dissection: review of the technique including its usefulness in practical neuroanatomy teaching, neurosurgery and neuroimaging

(2018) G. Wysiadecki et al.   FOLIA MORPHOLOGICA

Reproducibility and variation of diffusion measures in the squirrel monkey brain, in vivo and ex vivo

(2017) Kurt Schilling et al.   MAGNETIC RESONANCE IMAGING

The role of myelination in measures of white matter integrity: Combination of diffusion tensor imaging and two-photon microscopy of CLARITY intact brains

(2017) Eric H. Chang et al.   NEUROIMAGE

The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing

(2017) Christoph Leuze et al.   NEUROIMAGE

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging

(2017) Jeroen Mollink et al.   NEUROIMAGE

Can increased spatial resolution solve the crossing fiber problem for diffusion MRI?

(2017) Kurt Schilling et al.   NMR IN BIOMEDICINE

The challenge of mapping the human connectome based on diffusion tractography

(2017) Klaus H. Maier-Hein et al.   Nature Communications

Neurite dispersion: a new marker of multiple sclerosis spinal cord pathology?

(2017) Francesco Grussu et al.   Annals of Clinical and Translational Neurology

Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI

(2017) Joël Lefebvre et al.   Neurophotonics

An updated histological classification system for multiple sclerosis lesions

(2016) Tanja Kuhlmann et al.   ACTA NEUROPATHOLOGICA

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey

(2016) Chad J. Donahue et al.   JOURNAL OF NEUROSCIENCE

In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter

(2016) Els Fieremans et al.   NEUROIMAGE

Comparison of 3D orientation distribution functions measured with confocal microscopy and diffusion MRI

(2016) Kurt Schilling et al.   NEUROIMAGE

Multi-compartment microscopic diffusion imaging

(2016) Enrico Kaden et al.   NEUROIMAGE

In vivo quantification of demyelination and recovery using compartment-specific diffusion MRI metrics validated by electron microscopy

(2016) Ileana O. Jelescu et al.   NEUROIMAGE

Evaluation of diffusion kurtosis imaging in ex vivo hypomyelinated mouse brains

(2016) Nathaniel D. Kelm et al.   NEUROIMAGE

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA

(2016) Justus M. Kebschull et al.   NEURON

En face speckle reduction in optical coherence microscopy by frequency compounding

(2016) Caroline Magnain et al.   OPTICS LETTERS

Polarization sensitive optical coherence microscopy for brain imaging

(2016) Hui Wang et al.   OPTICS LETTERS

Estimating Fiber Orientation Distribution Functions in 3D-Polarized Light Imaging

(2016) Markus Axer et al.   Frontiers in Neuroanatomy

3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas

(2016) Nicole Schubert et al.   Frontiers in Neuroanatomy

Quantitative Histological Validation of Diffusion Tensor MRI with Two-Photon Microscopy of Cleared Mouse Brain

(2016) Koji KAMAGATA et al.   Magnetic Resonance in Medical Sciences

How Klingler’s dissection permits exploration of brain structural connectivity? An electron microscopy study of human white matter

(2015) Ilyess Zemmoura et al.   Brain Structure & Function

Dentatorubrothalamic tract localization with postmortem MR diffusion tractography compared to histological 3D reconstruction

(2015) J. Mollink et al.   Brain Structure & Function

Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems

(2015) Evan Murray et al.   CELL

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Validation of High-Resolution Tractography AgainstIn VivoTracing in the Macaque Visual Cortex

(2015) Hojjatollah Azadbakht et al.   CEREBRAL CORTEX

Target sites for transcallosal fibers in human visual cortex – A combined diffusion and polarized light imaging study

(2015) Svenja Caspers et al.   CORTEX

Detection of aberrant hippocampal mossy fiber connections: Ex vivo mesoscale diffusion MRI and microtractography with histological validation in a patient with uncontrolled temporal lobe epilepsy

(2015) Michel Modo et al.   HUMAN BRAIN MAPPING

Validation of tractography: Comparison with manganese tracing

(2015) Thomas R. Knösche et al.   HUMAN BRAIN MAPPING

Comparison of diffusion tractography and tract-tracing measures of connectivity strength in rhesus macaque connectome

(2015) Martijn P. van den Heuvel et al.   HUMAN BRAIN MAPPING

Understanding fiber mixture by simulation in 3D Polarized Light Imaging

(2015) Melanie Dohmen et al.   NEUROIMAGE

Probing region-specific microstructure of human cortical areas using high angular and spatial resolution diffusion MRI

(2015) Manisha Aggarwal et al.   NEUROIMAGE

3D structure tensor analysis of light microscopy data for validating diffusion MRI

(2015) Ahmad Raza Khan et al.   NEUROIMAGE

Mesoscopic structure of neuronal tracts from time-dependent diffusion

(2015) Lauren M. Burcaw et al.   NEUROIMAGE

Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data

(2015) Hanbo Chen et al.   NEUROIMAGE

In vivo histology of the myelin g-ratio with magnetic resonance imaging

(2015) Nikola Stikov et al.   NEUROIMAGE

The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter

(2015) Susie Y. Huang et al.   NEUROIMAGE

Possum—A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections

(2015) Piotr Majka et al.   NEUROINFORMATICS

Preservation of the optic radiations based on comparative analysis of diffusion tensor imaging tractography and anatomical dissection

(2015) Roland P. Nooij et al.   Frontiers in Neuroanatomy

Scalable and DiI-compatible optical clearance of the mammalian brain

(2015) Bing Hou et al.   Frontiers in Neuroanatomy

A multiscale approach for the reconstruction of the fiber architecture of the human brain based on 3D-PLI

(2015) Julia Reckfort et al.   Frontiers in Neuroanatomy

Histological validation of high-resolution DTI in human post mortem tissue

(2015) Arne Seehaus et al.   Frontiers in Neuroanatomy

A versatile clearing agent for multi-modal brain imaging

(2015) Irene Costantini et al.   Scientific Reports

Optical coherence tomography visualizes neurons in human entorhinal cortex

(2015) Caroline Magnain et al.   Neurophotonics

A new myeloarchitectonic map of the human neocortex based on data from the Vogt–Vogt school

(2014) Rudolf Nieuwenhuys et al.   Brain Structure & Function

Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing

(2014) Bin Yang et al.   CELL

Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: Time well spent?

(2014) Evan Calabrese et al.   HUMAN BRAIN MAPPING

Frontal Cortical and Subcortical Projections Provide a Basis for Segmenting the Cingulum Bundle: Implications for Neuroimaging and Psychiatric Disorders

(2014) S. R. Heilbronner et al.   JOURNAL OF NEUROSCIENCE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

The big data challenges of connectomics

(2014) Jeff W Lichtman et al.   NATURE NEUROSCIENCE

Advanced CLARITY for rapid and high-resolution imaging of intact tissues

(2014) Raju Tomer et al.   Nature Protocols

Improving diffusion-weighted imaging of post-mortem human brains: SSFP at 7T

(2014) Sean Foxley et al.   NEUROIMAGE

Mapping mean axon diameter and axonal volume fraction by MRI using temporal diffusion spectroscopy

(2014) Junzhong Xu et al.   NEUROIMAGE

FIBRASCAN: A novel method for 3D white matter tract reconstruction in MR space from cadaveric dissection

(2014) Ilyess Zemmoura et al.   NEUROIMAGE

Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata

(2014) Hui Wang et al.   NEUROIMAGE

Addressing the Path-Length-Dependency Confound in White Matter Tract Segmentation

(2014) Matthew G. Liptrot et al.   PLoS One

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

(2014) Cibu Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI

(2013) Alessandro Daducci et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Human and Monkey Ventral Prefrontal Fibers Use the Same Organizational Principles to Reach Their Targets: Tracing versus Tractography

(2013) S. Jbabdi et al.   JOURNAL OF NEUROSCIENCE

The Organization of Prefrontal-Subthalamic Inputs in Primates Provides an Anatomical Substrate for Both Functional Specificity and Integration: Implications for Basal Ganglia Models and Deep Brain Stimulation

(2013) W. I. A. Haynes et al.   JOURNAL OF NEUROSCIENCE

Fiberfox: Facilitating the creation of realistic white matter software phantoms

(2013) Peter F. Neher et al.   MAGNETIC RESONANCE IN MEDICINE

Tractometer: Towards validation of tractography pipelines

(2013) Marc-Alexandre Côté et al.   MEDICAL IMAGE ANALYSIS

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: A case study at 11.7T

(2013) Manisha Aggarwal et al.   NEUROIMAGE

Pushing the limits of in vivo diffusion MRI for the Human Connectome Project

(2013) K. Setsompop et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

The Human Connectome Project and beyond: Initial applications of 300mT/m gradients

(2013) Jennifer A. McNab et al.   NEUROIMAGE

Why diffusion tensor MRI does well only some of the time: Variance and covariance of white matter tissue microstructure attributes in the living human brain

(2013) Silvia De Santis et al.   NEUROIMAGE

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI

(2013) Daniel H. Adler et al.   NEUROIMAGE

Blockface histology with optical coherence tomography: A comparison with Nissl staining

(2013) Caroline Magnain et al.   NEUROIMAGE

Serial optical coherence scanner for large-scale brain imaging at microscopic resolution

(2013) Hui Wang et al.   NEUROIMAGE

Validation of DTI Tractography-Based Measures of Primary Motor Area Connectivity in the Squirrel Monkey Brain

(2013) Yurui Gao et al.   PLoS One

Imaging of non-tumorous and tumorous human brain tissues with full-field optical coherence tomography

(2013) Osnath Assayag et al.   NeuroImage-Clinical

Mapping of the mouse olfactory system with manganese-enhanced magnetic resonance imaging and diffusion tensor imaging

(2012) David A. Gutman et al.   Brain Structure & Function

Analysis of the subcomponents and cortical terminations of the perisylvian superior longitudinal fasciculus: a fiber dissection and DTI tractography study

(2012) Juan Martino et al.   Brain Structure & Function

Layer-Specific Intracortical Connectivity Revealed with Diffusion MRI

(2012) C. W. U. Leuze et al.   CEREBRAL CORTEX

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

Examining brain microstructure using structure tensor analysis of histological sections

(2012) Matthew D. Budde et al.   NEUROIMAGE

NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain

(2012) Hui Zhang et al.   NEUROIMAGE

White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI

(2012) Derek K. Jones et al.   NEUROIMAGE

Validation of diffusion tensor MRI in the central nervous system using light microscopy: quantitative comparison of fiber properties

(2012) A. S. Choe et al.   NMR IN BIOMEDICINE

Cortex-sparing fiber dissection: an improved method for the study of white matter anatomy in the human brain

(2011) Juan Martino et al.   JOURNAL OF ANATOMY

Rules Ventral Prefrontal Cortical Axons Use to Reach Their Targets: Implications for Diffusion Tensor Imaging Tractography and Deep Brain Stimulation for Psychiatric Illness

(2011) J. F. Lehman et al.   JOURNAL OF NEUROSCIENCE

Accuracy of image registration between MRI and light microscopy in the ex vivo brain

(2011) Ann S. Choe et al.   MAGNETIC RESONANCE IMAGING

Reconstructing micrometer-scale fiber pathways in the brain: Multi-contrast optical coherence tomography based tractography

(2011) Hui Wang et al.   NEUROIMAGE

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner

(2011) Karla L. Miller et al.   NEUROIMAGE

Diffusion tractography of post-mortem human brains: Optimization and comparison of spin echo and steady-state free precession techniques

(2011) Karla L. Miller et al.   NEUROIMAGE

Along-tract statistics allow for enhanced tractography analysis

(2011) John B. Colby et al.   NEUROIMAGE

The importance of axonal undulation in diffusion MR measurements: a Monte Carlo simulation study

(2011) Markus Nilsson et al.   NMR IN BIOMEDICINE

Temporal lobe association fiber tractography as compared to histology and dissection

(2011) Nathalie Holl et al.   SURGICAL AND RADIOLOGIC ANATOMY

High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging

(2011) Markus Axer et al.   Frontiers in Neuroinformatics

An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets

(2010) Tim B. Dyrby et al.   HUMAN BRAIN MAPPING

Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain

(2010) Manisha Aggarwal et al.   MAGNETIC RESONANCE IN MEDICINE

Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: An anatomofunctional transgenic mouse brain imaging study

(2010) J. Lebenberg et al.   NEUROIMAGE

Orientationally invariant indices of axon diameter and density from diffusion MRI

(2010) Daniel C. Alexander et al.   NEUROIMAGE

A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain

(2010) Markus Axer et al.   NEUROIMAGE

Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain

(2010) Trygve B. Leergaard et al.   PLoS One

Neurite beading is sufficient to decrease the apparent diffusion coefficient after ischemic stroke

(2010) M. D. Budde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Imaging of human brain tumor tissue by near-infrared laser coherence tomography

(2009) H. J. Böhringer et al.   ACTA NEUROCHIRURGICA

Cerebral White Matter

(2009) Jeremy D. Schmahmann et al.   Annals of the New York Academy of Sciences

In vivo measurement of axon diameter distribution in the corpus callosum of rat brain

(2009) Daniel Barazany et al.   BRAIN

The human brain in numbers: a linearly scaled-up primate brain

(2009) Suzana Herculano-Houzel   Frontiers in Human Neuroscience

High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession

(2009) Jennifer A. McNab et al.   NEUROIMAGE

Neurite density from magnetic resonance diffusion measurements at ultrahigh field: Comparison with light microscopy and electron microscopy

(2009) Sune N. Jespersen et al.   NEUROIMAGE

Fiber dissection of the visual pathways: Analysis of the relationship of optic radiations to lateral ventricle: A cadaveric study

(2009) Atul Goel et al.   NEUROLOGY INDIA

The cuprizone model for demyelination

(2008) Ø. Torkildsen et al.   ACTA NEUROLOGICA SCANDINAVICA

New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models

(2008) Cyril Poupon et al.   MAGNETIC RESONANCE IN MEDICINE

Axcaliber: A method for measuring axon diameter distribution from diffusion MRI

(2008) Yaniv Assaf et al.   MAGNETIC RESONANCE IN MEDICINE

High-field diffusion MR histology: Image-based correction of eddy-current ghosts in diffusion-weighted rapid acquisition with relaxation enhancement (DW-RARE)

(2008) J. Michael Tyszka et al.   MAGNETIC RESONANCE IN MEDICINE

Structure-specific statistical mapping of white matter tracts

(2008) Paul A. Yushkevich et al.   NEUROIMAGE

Probabilistic fibre tracking: Differentiation of connections from chance events

(2008) David M. Morris et al.   NEUROIMAGE

Tract-based morphometry for white matter group analysis

(2008) Lauren J. O'Donnell et al.   NEUROIMAGE

Postmortem interval alters the water relaxation and diffusion properties of rat nervous tissue — Implications for MRI studies of human autopsy samples

(2008) Timothy M. Shepherd et al.   NEUROIMAGE

Novel optical imaging technique to determine the 3-D orientation of collagen fibers in cartilage: variable-incidence angle polarization-sensitive optical coherence tomography

(2008) N. Ugryumova et al.   OSTEOARTHRITIS AND CARTILAGE

The design of anisotropic diffusion phantoms for the validation of diffusion weighted magnetic resonance imaging

(2008) Els Fieremans et al.   PHYSICS IN MEDICINE AND BIOLOGY

Diffusion-Tensor Neuronal Fiber Tractography and Manganese-enhanced MR Imaging of Primate Visual Pathway in the Common Marmoset: Preliminary Results

(2008) Masayuki Yamada et al.   RADIOLOGY

Atlas-based segmentation of white matter tracts of the human brain using diffusion tensor tractography and comparison with classical dissection

(2007) I. Nigel C. Lawes et al.   NEUROIMAGE

Axonal injury detected byin vivodiffusion tensor imaging correlates with neurological disability in a mouse model of multiple sclerosis

(2007) Matthew D. Budde et al.   NMR IN BIOMEDICINE