Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI

Intra-axonal diffusivity in brain white matter

(2019) Bibek Dhital et al.   NEUROIMAGE

On modeling

(2018) Dmitry S. Novikov et al.   MAGNETIC RESONANCE IN MEDICINE

Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI

(2018) Dmitry S. Novikov et al.   NEUROIMAGE

Quantification of anisotropy and orientation in 3D electron microscopy and diffusion tensor imaging in injured rat brain

(2018) Raimo A. Salo et al.   NEUROIMAGE

Histological validation of diffusion MRI fiber orientation distributions and dispersion

(2018) Kurt G. Schilling et al.   NEUROIMAGE

Three dimensional electron microscopy reveals changing axonal and myelin morphology along normal and partially injured optic nerves

(2018) Marcus K. Giacci et al.   Scientific Reports

AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks

(2018) Aldo Zaimi et al.   Scientific Reports

On the scaling behavior of water diffusion in human brain white matter

(2018) Jelle Veraart et al.   NEUROIMAGE

Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation

(2018) Dmitry S. Novikov et al.   NMR IN BIOMEDICINE

Automated synaptic connectivity inference for volume electron microscopy

(2017) Sven Dorkenwald et al.   NATURE METHODS

Diffusion time dependence of microstructural parameters in fixed spinal cord

(2017) Sune Nørhøj Jespersen et al.   NEUROIMAGE

TE dependent Diffusion Imaging (TEdDI) distinguishes between compartmental T 2 relaxation times

(2017) Jelle Veraart et al.   NEUROIMAGE

What dominates the time dependence of diffusion transverse to axons: Intra- or extra-axonal water?

(2017) Hong-Hsi Lee et al.   NEUROIMAGE

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging

(2017) Jeroen Mollink et al.   NEUROIMAGE

Disentangling micro from mesostructure by diffusion MRI: A Bayesian approach

(2017) Marco Reisert et al.   NEUROIMAGE

A framework for optimal whole-sample histological quantification of neurite orientation dispersion in the human spinal cord

(2016) Francesco Grussu et al.   JOURNAL OF NEUROSCIENCE METHODS

In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter

(2016) Els Fieremans et al.   NEUROIMAGE

A revised model for estimating g-ratio from MRI

(2016) Kathryn L. West et al.   NEUROIMAGE

Bingham–NODDI: Mapping anisotropic orientation dispersion of neurites using diffusion MRI

(2016) Maira Tariq et al.   NEUROIMAGE

Comparison of 3D orientation distribution functions measured with confocal microscopy and diffusion MRI

(2016) Kurt Schilling et al.   NEUROIMAGE

White matter microstructure from nonparametric axon diameter distribution mapping

(2016) Dan Benjamini et al.   NEUROIMAGE

Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter

(2016) Silvia De Santis et al.   NEUROIMAGE

Towards higher sensitivity and stability of axon diameter estimation with diffusion-weighted MRI

(2016) Farshid Sepehrband et al.   NMR IN BIOMEDICINE

G protein-coupled receptor 37 is a negative regulator of oligodendrocyte differentiation and myelination

(2016) Hyun-Jeong Yang et al.   Nature Communications

Parametric Probability Distribution Functions for Axon Diameters of Corpus Callosum

(2016) Farshid Sepehrband et al.   Frontiers in Neuroanatomy

Large-scale automatic reconstruction of neuronal processes from electron microscopy images

(2015) Verena Kaynig et al.   MEDICAL IMAGE ANALYSIS

In vivo mapping of human spinal cord microstructure at 300 mT/m

(2015) Tanguy Duval et al.   NEUROIMAGE

Mesoscopic structure of neuronal tracts from time-dependent diffusion

(2015) Lauren M. Burcaw et al.   NEUROIMAGE

In vivo histology of the myelin g-ratio with magnetic resonance imaging

(2015) Nikola Stikov et al.   NEUROIMAGE

Crowdsourcing the creation of image segmentation algorithms for connectomics

(2015) Ignacio Arganda-Carreras et al.   Frontiers in Neuroanatomy

Distribution of axon diameters in cortical white matter: an electron-microscopic study on three human brains and a macaque

(2014) Daniel Liewald et al.   BIOLOGICAL CYBERNETICS

Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites

(2014) Bohumil Maco et al.   Nature Protocols

Revealing mesoscopic structural universality with diffusion

(2014) D. S. Novikov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microstructural organization of axons in the human corpus callosum quantified by diffusion-weighted magnetic resonance spectroscopy of N-acetylaspartate and post-mortem histology

(2013) Itamar Ronen et al.   Brain Structure & Function

A Quantitative Analysis of Current Practices in Optical Flow Estimation and the Principles Behind Them

(2013) Deqing Sun et al.   INTERNATIONAL JOURNAL OF COMPUTER VISION

Deconstructing Complexity: Serial Block-Face Electron Microscopic Analysis of the Hippocampal Mossy Fiber Synapse

(2013) S. A. Wilke et al.   JOURNAL OF NEUROSCIENCE

Mapping average axon diameters in porcine spinal cord white matter and rat corpus callosum using d-PFG MRI

(2013) M.E. Komlosh et al.   NEUROIMAGE

SLIC Superpixels Compared to State-of-the-Art Superpixel Methods

(2012) R. Achanta et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI

(2012) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain

(2012) Hui Zhang et al.   NEUROIMAGE

Partial interruption of axonal transport due to microtubule breakage accounts for the formation of periodic varicosities after traumatic axonal injury

(2011) Min D. Tang-Schomer et al.   EXPERIMENTAL NEUROLOGY

Orientationally invariant indices of axon diameter and density from diffusion MRI

(2010) Daniel C. Alexander et al.   NEUROIMAGE

Bound pool fractions complement diffusion measures to describe white matter micro and macrostructure

(2010) Nikola Stikov et al.   NEUROIMAGE

Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain

(2010) Trygve B. Leergaard et al.   PLoS One

Neurite beading is sufficient to decrease the apparent diffusion coefficient after ischemic stroke

(2010) M. D. Budde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo measurement of axon diameter distribution in the corpus callosum of rat brain

(2009) Daniel Barazany et al.   BRAIN

How the Optic Nerve Allocates Space, Energy Capacity, and Information

(2009) J. A. Perge et al.   JOURNAL OF NEUROSCIENCE

Neurite density from magnetic resonance diffusion measurements at ultrahigh field: Comparison with light microscopy and electron microscopy

(2009) Sune N. Jespersen et al.   NEUROIMAGE

Evolution amplified processing with temporally dispersed slow neuronal connectivity in primates

(2009) R. Caminiti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Axcaliber: A method for measuring axon diameter distribution from diffusion MRI

(2008) Yaniv Assaf et al.   MAGNETIC RESONANCE IN MEDICINE