When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity

Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects

(2018) Angela Albi et al.   JOURNAL OF NEUROIMAGING

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging

(2017) Jeroen Mollink et al.   NEUROIMAGE

The challenge of mapping the human connectome based on diffusion tractography

(2017) Klaus H. Maier-Hein et al.   Nature Communications

Clarifying Human White Matter

(2016) Brian A. Wandell   Annual Review of Neuroscience

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey

(2016) Chad J. Donahue et al.   JOURNAL OF NEUROSCIENCE

Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis

(2016) Alexandra Kammen et al.   NEUROIMAGE

Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project

(2016) Stamatios N. Sotiropoulos et al.   NEUROIMAGE

Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics

(2016) Chun-Hung Yeh et al.   NEUROIMAGE

Histological methods forex vivoaxon tracing: A systematic review

(2016) Cassandra L. Heilingoetter et al.   NEUROLOGICAL RESEARCH

Atlasing the frontal lobe connections and their variability due to age and education: a spherical deconvolution tractography study

(2015) K. Rojkova et al.   Brain Structure & Function

A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data

(2015) Evan Calabrese et al.   CEREBRAL CORTEX

Validation of High-Resolution Tractography AgainstIn VivoTracing in the Macaque Visual Cortex

(2015) Hojjatollah Azadbakht et al.   CEREBRAL CORTEX

Validation of tractography: Comparison with manganese tracing

(2015) Thomas R. Knösche et al.   HUMAN BRAIN MAPPING

Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging

(2015) Giang Tran et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography

(2015) Alessandro Daducci et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates

(2015) Marina Sergejeva et al.   JOURNAL OF NEUROSCIENCE METHODS

Strengths and weaknesses of state of the art fiber tractography pipelines – A comprehensive in-vivo and phantom evaluation study using Tractometer

(2015) Peter F. Neher et al.   MEDICAL IMAGE ANALYSIS

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

Measuring macroscopic brain connections in vivo

(2015) Saad Jbabdi et al.   NATURE NEUROSCIENCE

SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography

(2015) Robert E. Smith et al.   NEUROIMAGE

Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data

(2015) Hanbo Chen et al.   NEUROIMAGE

A comparative analysis of mouse and human medial geniculate nucleus connectivity: A DTI and anterograde tracing study

(2015) Orion P. Keifer et al.   NEUROIMAGE

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

Oscillating gradient diffusion MRI reveals unique microstructural information in normal and hypoxia-ischemia injured mouse brains

(2014) Dan Wu et al.   MAGNETIC RESONANCE IN MEDICINE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Evaluation and statistical inference for human connectomes

(2014) Franco Pestilli et al.   NATURE METHODS

Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI

(2014) Jian Cheng et al.   NEUROIMAGE

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

(2014) Ben Jeurissen et al.   NEUROIMAGE

Towards quantitative connectivity analysis: reducing tractography biases

(2014) Gabriel Girard et al.   NEUROIMAGE

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

(2014) Cibu Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Semi-automated 3D segmentation of major tracts in the rat brain: comparing DTI with standard histological methods

(2013) Erika Gyengesi et al.   Brain Structure & Function

Human and Monkey Ventral Prefrontal Fibers Use the Same Organizational Principles to Reach Their Targets: Tracing versus Tractography

(2013) S. Jbabdi et al.   JOURNAL OF NEUROSCIENCE

Design of multishell sampling schemes with uniform coverage in diffusion MRI

(2013) Emmanuel Caruyer et al.   MAGNETIC RESONANCE IN MEDICINE

Investigation of resolution effects using a specialized diffusion tensor phantom

(2013) Michael Bach et al.   MAGNETIC RESONANCE IN MEDICINE

A ranking of diffusion MRI compartment models with in vivo human brain data

(2013) Uran Ferizi et al.   MAGNETIC RESONANCE IN MEDICINE

Fiberfox: Facilitating the creation of realistic white matter software phantoms

(2013) Peter F. Neher et al.   MAGNETIC RESONANCE IN MEDICINE

Tractometer: Towards validation of tractography pipelines

(2013) Marc-Alexandre Côté et al.   MEDICAL IMAGE ANALYSIS

Toward global tractography

(2013) J.-F. Mangin et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

In vivo high-resolution diffusion tensor imaging of the mouse brain

(2013) Dan Wu et al.   NEUROIMAGE

Quantification of track-weighted imaging (TWI): Characterisation of within-subject reproducibility and between-subject variability

(2013) Lisa Willats et al.   NEUROIMAGE

The Retinotopic Organization of Striate Cortex Is Well Predicted by Surface Topology

(2012) Noah C. Benson et al.   CURRENT BIOLOGY

MRtrix: Diffusion tractography in crossing fiber regions

(2012) J-Donald Tournier et al.   INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY

Model-based analysis of multishell diffusion MR data for tractography: How to get over fitting problems

(2012) Saad Jbabdi et al.   MAGNETIC RESONANCE IN MEDICINE

Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information

(2012) Robert E. Smith et al.   NEUROIMAGE

Mapping the Human Connectome

(2012) Arthur W. Toga et al.   NEUROSURGERY

Tract Specific Reproducibility of Tractography Based Morphology and Diffusion Metrics

(2012) René M. H. Besseling et al.   PLoS One

The contribution of gliosis to diffusion tensor anisotropy and tractography following traumatic brain injury: validation in the rat using Fourier analysis of stained tissue sections

(2011) Matthew D. Budde et al.   BRAIN

Blipped-controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g-factor penalty

(2011) Kawin Setsompop et al.   MAGNETIC RESONANCE IN MEDICINE

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom

(2011) Pierre Fillard et al.   NEUROIMAGE

Super-resolution track-density imaging studies of mouse brain: Comparison to histology

(2011) Fernando Calamante et al.   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison

(2011) Eleftheria Panagiotaki et al.   NEUROIMAGE

Generalized ${ q}$-Sampling Imaging

(2010) Fang-Cheng Yeh et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Ground truth hardware phantoms for validation of diffusion-weighted MRI applications

(2010) Pim Pullens et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Multiband multislice GE-EPI at 7 tesla, with 16-fold acceleration using partial parallel imaging with application to high spatial and temporal whole-brain fMRI

(2010) Steen Moeller et al.   MAGNETIC RESONANCE IN MEDICINE

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging

(2010) David A. Feinberg et al.   PLoS One

In vivo measurement of axon diameter distribution in the corpus callosum of rat brain

(2009) Daniel Barazany et al.   BRAIN

MR Tractography: A Review of Its Clinical Applications

(2009) Kei YAMADA et al.   Magnetic Resonance in Medical Sciences

Diffusion Tensor MR Imaging and Fiber Tractography: Theoretic Underpinnings

(2008) P. Mukherjee et al.   AMERICAN JOURNAL OF NEURORADIOLOGY

The design of anisotropic diffusion phantoms for the validation of diffusion weighted magnetic resonance imaging

(2008) Els Fieremans et al.   PHYSICS IN MEDICINE AND BIOLOGY