Mutualistic interplay between bacteriophages and bacteria in the human gut

The gut virome in two indigenous populations from Malaysia

(2022) Chuen Zhang Lee et al.   Scientific Reports

Discovery, diversity, and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts

(2022) Anastasia Gulyaeva et al.   Cell Reports

High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome

(2022) Wenshan Zheng et al.   SCIENCE

Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria

(2021) Koji Yahara et al.   Nature Communications

Massive expansion of human gut bacteriophage diversity

(2021) Luis F. Camarillo-Guerrero et al.   CELL

Common Oral Medications Lead to Prophage Induction in Bacterial Isolates from the Human Gut

(2021) Steven G. Sutcliffe et al.   Viruses-Basel

Targeting of Mammalian Glycans Enhances Phage Predation in the Gastrointestinal Tract

(2021) Sabrina I. Green et al.   mBio

Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

(2021) Akshit Goyal et al.   Nature Communications

Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features

(2021) Natalya Yutin et al.   Nature Communications

MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut

(2021) Martial Marbouty et al.   eLife

Characterization of the gut DNA and RNA viromes in a cohort of Chinese residents and visiting Pakistanis

(2021) Qiulong Yan et al.   Virus Evolution

The long-term genetic stability and individual specificity of the human gut microbiome

(2021) Lianmin Chen et al.   CELL

Stability of the human gut virome and effect of gluten-free diet

(2021) Sanzhima Garmaeva et al.   Cell Reports

Probing the “Dark Matter” of the Human Gut Phageome: Culture Assisted Metagenomics Enables Rapid Discovery and Host-Linking for Novel Bacteriophages

(2021) C. Brian Fitzgerald et al.   Frontiers in Cellular and Infection Microbiology

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature

(2021) Olivier Zablocki et al.   PeerJ

Thousands of previously unknown phages discovered in whole-community human gut metagenomes

(2021) Sean Benler et al.   Microbiome

Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens

(2021) Emma Guerin et al.   Microbiome

Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis

(2021) Andrey N. Shkoporov et al.   BMC BIOLOGY

Gut microbiome ADP-ribosyltransferases are widespread phage-encoded fitness factors

(2021) Eric M. Brown et al.   Cell Host & Microbe

Campylobacter phages use hypermutable polyG tracts to create phenotypic diversity and evade bacterial resistance

(2021) Martine C. Holst Sørensen et al.   Cell Reports

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome

(2021) Stephen Nayfach et al.   Nature Microbiology

Phage Diversity in the Human Gut Microbiome: a Taxonomist’s Perspective

(2021) Evelien M. Adriaenssens   mSystems

Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease

(2021) Yoshihiko Tomofuji et al.   ANNALS OF THE RHEUMATIC DISEASES

Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements

(2021) Suzanne Humphrey et al.   Nature Communications

Lateral transduction is inherent to the life cycle of the archetypical Salmonella phage P22

(2021) Alfred Fillol-Salom et al.   Nature Communications

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner

(2020) Mohammadali Khan Mirzaei et al.   Cell Host & Microbe

Fitness trade-offs resulting from bacteriophage resistance potentiate synergistic antibacterial strategies

(2020) Mihnea R. Mangalea et al.   INFECTION AND IMMUNITY

Are there 1031 virus particles on Earth, or more, or less?

(2020) A.R. Mushegian   JOURNAL OF BACTERIOLOGY

New insights into intestinal phages

(2020) R. Sausset et al.   Mucosal Immunology

The arms race between bacteria and their phage foes

(2020) Hannah G. Hampton et al.   NATURE

The crAss-like Phage Group: How Metagenomics Reshaped the Human Virome

(2020) Eugene V. Koonin et al.   TRENDS IN MICROBIOLOGY

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome

(2020) Lance Boling et al.   Gut Microbes

The stepwise assembly of the neonatal virome is modulated by breastfeeding

(2020) Guanxiang Liang et al.   NATURE

Toward a dynamical understanding of microbial communities

(2020) Paul B. Rainey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental manipulation of selfish genetic elements links genes to microbial community function

(2020) Steven D. Quistad et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Pleiotropy complicates a trade-off between phage resistance and antibiotic resistance

(2020) Alita R. Burmeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

First crAss-Like Phage Genome Encoding the Diversity-Generating Retroelement (DGR)

(2020) Vera Morozova et al.   Viruses-Basel

Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions

(2020) Andrew J. Hryckowian et al.   Cell Host & Microbe

Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts

(2020) Kosuke Fujimoto et al.   Cell Host & Microbe

The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages

(2020) Marta Lourenço et al.   Cell Host & Microbe

Structure and mechanism of DNA delivery of a gene transfer agent

(2020) Pavol Bárdy et al.   Nature Communications

Strain-level epidemiology of microbial communities and the human microbiome

(2020) Yan Yan et al.   Genome Medicine

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron

(2020) Nathan T. Porter et al.   Nature Microbiology

Adsorption sequencing (AdsorpSeq) as a rapid method to link environmental bacteriophages to hosts

(2020) Patrick A. de Jonge et al.   iScience

Human-Gut-DNA Virome Variations across Geography, Ethnicity, and Urbanization

(2020) Tao Zuo et al.   Cell Host & Microbe

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

(2020) Ann C. Gregory et al.   Cell Host & Microbe

Trading-off and trading-up in the world of bacteria–phage evolution

(2020) Alita R. Burmeister et al.   CURRENT BIOLOGY

Intravesical bacteriophages for treating urinary tract infections in patients undergoing transurethral resection of the prostate: a randomised, placebo-controlled, double-blind clinical trial

(2020) Lorenz Leitner et al.   LANCET INFECTIOUS DISEASES

In situ reprogramming of gut bacteria by oral delivery

(2020) Bryan B. Hsu et al.   Nature Communications

Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation

(2020) Lorraine A. Draper et al.   BMC BIOLOGY

Fitness benefits to bacteria of carrying prophages and prophage‐encoded antibiotic‐resistance genes peak in different environments

(2020) Carolin C. Wendling et al.   EVOLUTION

Pervasive prophage recombination occurs during evolution of spore-forming Bacilli

(2020) Anna Dragoš et al.   ISME Journal

crAssphage genomes identified in fecal samples of an adult and infants with evidence of positive genomic selective pressure within tail protein genes

(2020) Bryan P. Brown et al.   VIRUS RESEARCH

Strain diversity in the microbiome: Lessons from Bacteroides fragilis

(2020) Hannah C. Carrow et al.   PLoS Pathogens

Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities

(2020) Manuel Kleiner et al.   Microbiome

Dietary Fructose and Microbiota-Derived Short-Chain Fatty Acids Promote Bacteriophage Production in the Gut Symbiont Lactobacillus reuteri

(2019) Jee-Hwan Oh et al.   Cell Host & Microbe

Occurrence of the potent mutagens 2- nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles

(2019) Aldenor G. Santos et al.   Scientific Reports

Megaphages infect Prevotella and variants are widespread in gut microbiomes

(2019) Audra E. Devoto et al.   Nature Microbiology

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

(2019) Nandita R. Garud et al.   PLOS BIOLOGY

Bacteriophages as Environmental Reservoirs of Antibiotic Resistance

(2019) William Calero-Cáceres et al.   TRENDS IN MICROBIOLOGY

Bacteriophage trigger antiviral immunity and prevent clearance of bacterial infection

(2019) Johanna M. Sweere et al.   SCIENCE

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

(2019) Yuanqiang Zou et al.   NATURE BIOTECHNOLOGY

A new genomic blueprint of the human gut microbiota

(2019) Alexandre Almeida et al.   NATURE

Gut mucosal virome alterations in ulcerative colitis

(2019) Tao Zuo et al.   GUT

Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

(2019) Lasha Gogokhia et al.   Cell Host & Microbe

The Battle Within: Interactions of Bacteriophages and Bacteria in the Gastrointestinal Tract

(2019) Luisa De Sordi et al.   Cell Host & Microbe

Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

(2019) J. Leonardo Moreno-Gallego et al.   Cell Host & Microbe

Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Adaptive Evolution within Gut Microbiomes of Healthy People

(2019) Shijie Zhao et al.   Cell Host & Microbe

Bacteriophage Resistance Alters Antibiotic-Mediated Intestinal Expansion of Enterococci

(2019) Anushila Chatterjee et al.   INFECTION AND IMMUNITY

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

(2019) Ho Bin Jang et al.   NATURE BIOTECHNOLOGY

Multiple levels of the unknown in microbiome research

(2019) Andrew Maltez Thomas et al.   BMC BIOLOGY

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model

(2019) Bryan B. Hsu et al.   Cell Host & Microbe

Phage-Resistant Phase-Variant Sub-populations Mediate Herd Immunity Against Bacteriophage Invasion of Bacterial Meta-Populations

(2019) Christopher J. R. Turkington et al.   Frontiers in Microbiology

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

(2019) Simon Roux et al.   Nature Microbiology

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

(2019) Robert A. Edwards et al.   Nature Microbiology

Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut

(2019) Nelson Frazão et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic transduction by phages and chromosomal islands: The new and noncanonical

(2019) Yin Ning Chiang et al.   PLoS Pathogens

Defining the human gut host–phage network through single-cell viral tagging

(2019) Mária Džunková et al.   Nature Microbiology

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

Bacterial biodiversity drives the evolution of CRISPR-based phage resistance

(2019) Ellinor O. Alseth et al.   NATURE

Detecting contamination in viromes using ViromeQC

(2019) Moreno Zolfo et al.   NATURE BIOTECHNOLOGY

Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease

(2019) Adam G. Clooney et al.   Cell Host & Microbe

Evidence for a multi-level trophic organization of the human gut microbiome

(2019) Tong Wang et al.   PLoS Computational Biology

Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation

(2019) Eitan Yaffe et al.   Nature Microbiology

Contemporary Phage Biology: From Classic Models to New Insights

(2018) Gal Ofir et al.   CELL

Rapid evolution of generalized resistance mechanisms can constrain the efficacy of phage-antibiotic treatments

(2018) Claire E. Moulton-Brown et al.   Evolutionary Applications

High parasite diversity accelerates host adaptation and diversification

(2018) A. Betts et al.   SCIENCE

The Diversity of Bacterial Lifestyles Hampers Bacteriophage Tenacity

(2018) Marta Lourenço et al.   Viruses-Basel

Shared and Distinct Features of Human Milk and Infant Stool Viromes

(2018) Pia S. Pannaraj et al.   Frontiers in Microbiology

Phase Variable Expression of a Single Phage Receptor in Campylobacter jejuni NCTC12662 Influences Sensitivity Toward Several Diverse CPS-Dependent Phages

(2018) Yilmaz Emre Gencay et al.   Frontiers in Microbiology

Phage puppet masters of the marine microbial realm

(2018) Mya Breitbart et al.   Nature Microbiology

Extensive impact of non-antibiotic drugs on human gut bacteria

(2018) Lisa Maier et al.   NATURE

Prokaryotic horizontal gene transfer within the human holobiont: ecological-evolutionary inferences, implications and possibilities

(2018) Ramakrishnan Sitaraman   Microbiome

Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

(2018) Cormac Brian Fitzgerald et al.   BMC GENOMICS

Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut

(2018) Emma Guerin et al.   Cell Host & Microbe

Efficacy and tolerability of a cocktail of bacteriophages to treat burn wounds infected by Pseudomonas aeruginosa (PhagoBurn): a randomised, controlled, double-blind phase 1/2 trial

(2018) Patrick Jault et al.   LANCET INFECTIOUS DISEASES

Prophages in Salmonella enterica : a driving force in reshaping the genome and physiology of their bacterial host?

(2018) Astrid Wahl et al.   MOLECULAR MICROBIOLOGY

Genome hypermobility by lateral transduction

(2018) John Chen et al.   SCIENCE

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation

(2018) L. A. Draper et al.   Microbiome

Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection

(2017) Stephan J. Ott et al.   GASTROENTEROLOGY

Lysogeny in nature: mechanisms, impact and ecology of temperate phages

(2017) Cristina Howard-Varona et al.   ISME Journal

The Threat of Antimicrobial Resistance on the Human Microbiome

(2017) Lauren Brinkac et al.   MICROBIAL ECOLOGY

Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

A growing microcolony can survive and support persistent propagation of virulent phages

(2017) Rasmus Skytte Eriksen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inflammation boosts bacteriophage transfer between Salmonella spp.

(2017) Médéric Diard et al.   SCIENCE

Bacteria–Bacteriophage Coevolution in the Human Gut: Implications for Microbial Diversity and Functionality

(2017) Pauline D. Scanlan   TRENDS IN MICROBIOLOGY

Viral communities of the human gut: metagenomic analysis of composition and dynamics

(2017) Varun Aggarwala et al.   Mobile DNA

Potential Effects of Horizontal Gene Exchange in the Human Gut

(2017) Aaron Lerner et al.   Frontiers in Immunology

Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut

(2017) Natalya Yutin et al.   Nature Microbiology

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay

(2017) Martial Marbouty et al.   Science Advances

Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

(2017) Sergei Maslov et al.   Scientific Reports

Pro- and anti-inflammatory responses of peripheral blood mononuclear cells induced by Staphylococcus aureus and Pseudomonas aeruginosa phages

(2017) Jonas D. Van Belleghem et al.   Scientific Reports

Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria

(2016) Sabrina Duranti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diverse Intestinal Bacteria Contain Putative Zwitterionic Capsular Polysaccharides with Anti-inflammatory Properties

(2016) C. Preston Neff et al.   Cell Host & Microbe

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

(2016) Cynthia L. Monaco et al.   Cell Host & Microbe

Genetic and life-history traits associated with the distribution of prophages in bacteria

(2016) Marie Touchon et al.   ISME Journal

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses

(2016) François Enault et al.   ISME Journal

Quantitative Selection Analysis of Bacteriophage φCbK Susceptibility in Caulobacter crescentus

(2016) Matthias Christen et al.   JOURNAL OF MOLECULAR BIOLOGY

Evolutionary Ecology of Prokaryotic Immune Mechanisms

(2016) Stineke van Houte et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Significance of Mutualistic Phages for Bacterial Ecology and Evolution

(2016) Nancy Obeng et al.   TRENDS IN MICROBIOLOGY

Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells

(2016) Jakob Haaber et al.   Nature Communications

Carriage of λ Latent Virus Is Costly for Its Bacterial Host due to Frequent Reactivation in Monoxenic Mouse Intestine

(2016) Marianne De Paepe et al.   PLoS Genetics

Re-examination of the relationship between marine virus and microbial cell abundances

(2016) Charles H. Wigington et al.   Nature Microbiology

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

(2016) Shafiqul Alam Sarker et al.   EBioMedicine

Piggyback-the-Winner in host-associated microbial communities

(2016) Cynthia B Silveira et al.   npj Biofilms and Microbiomes

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics

(2015) Jennifer R Brum et al.   ISME Journal

TheClostridium difficilecell wall protein CwpV confers phase-variable phage resistance

(2015) Ognjen Sekulovic et al.   MOLECULAR MICROBIOLOGY

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters

(2015) Jeremy J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Well-temperate phage: optimal bet-hedging against local environmental collapses

(2015) Sergei Maslov et al.   Scientific Reports

The pan-genome as a shared genomic resource: mutual cheating, cooperation and the black queen hypothesis

(2015) Matthew S. Fullmer et al.   Frontiers in Microbiology

Inter-individual differences in the gene content of human gut bacterial species

(2015) Ana Zhu et al.   GENOME BIOLOGY

The Surface Rhamnopolysaccharide Epa ofEnterococcus faecalisIs a Key Determinant of Intestinal Colonization

(2014) Lionel Rigottier-Gois et al.   JOURNAL OF INFECTIOUS DISEASES

When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness

(2014) Joseph Bondy-Denomy et al.   JOURNAL OF MICROBIOLOGY

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

Spatial heterogeneity of gut microbiota reveals multiple bacterial communities with distinct characteristics

(2014) Hsiao-Pei Lu et al.   Scientific Reports

Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni

(2014) P. Siringan et al.   Open Biology

Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation

(2013) Zeinab Hosseinidoust et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phage-induced diversification improves host evolvability

(2013) Hywel TP Williams   BMC EVOLUTIONARY BIOLOGY

The Trojan Horse of the microbiological arms race: phage-encoded toxins as a defence against eukaryotic predators

(2013) Jason W. Arnold et al.   ENVIRONMENTAL MICROBIOLOGY

Shanghai fever: a distinctPseudomonas aeruginosaenteric disease

(2013) Chih-Hsien Chuang et al.   GUT

Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

(2013) Sheetal R. Modi et al.   NATURE

Bacterial colonization factors control specificity and stability of the gut microbiota

(2013) S. Melanie Lee et al.   NATURE

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

Isolation and Characterization of the New Mosaic Filamentous Phage VFJ Φ of Vibrio cholerae

(2013) Qiuya Wang et al.   PLoS One

Rapid evolution of the human gut virome

(2013) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut

(2013) A. Reyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophage adhering to mucus provide a non-host-derived immunity

(2013) J. J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-Term Dynamics of Adaptation in Asexual Populations

(2013) M. J. Wiser et al.   SCIENCE

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

The human microbiome as a reservoir of antimicrobial resistance

(2013) John Penders et al.   Frontiers in Microbiology

The Human Microbiome: Our Second Genome

(2012) Elizabeth A. Grice et al.   Annual Review of Genomics and Human Genetics

Human Microbiome: A Genetic Bazaar for Microbes?

(2012) Morgan G.I. Langille et al.   CURRENT BIOLOGY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

STM2209-STM2208 (opvAB): A Phase Variation Locus of Salmonella enterica Involved in Control of O-Antigen Chain Length

(2012) Ignacio Cota et al.   PLoS One

Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads

(2012) Simon Roux et al.   PLoS One

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

(2012) B. Stecher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hypervariable loci in the human gut virome

(2012) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A composite bacteriophage alters colonization by an intestinal commensal bacterium

(2012) B. A. Duerkop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Intestinal colonization by enteroaggregative Escherichia coli supports long-term bacteriophage replication in mice

(2011) Damien Maura et al.   ENVIRONMENTAL MICROBIOLOGY

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

High-frequency phage-mediated gene transfer in freshwater environments determined at single-cell level

(2010) Takehiko Kenzaka et al.   ISME Journal

Bacteriophage Lambda: a Paradigm Revisited

(2010) P. C. M. Fogg et al.   JOURNAL OF VIROLOGY

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Cryptic prophages help bacteria cope with adverse environments

(2010) Xiaoxue Wang et al.   Nature Communications

In vivo replication of T4 and T7 bacteriophages in germ-free mice colonized with Escherichia coli

(2009) Marietta Weiss et al.   VIROLOGY