Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
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Title
Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-02-26
DOI
10.1038/s41467-021-21586-6
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Note: Only part of the references are listed.- Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut
- (2020) Kern Rei Chng et al. Nature Ecology & Evolution
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- (2019) Alan R. Pacheco et al. Nature Communications
- Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities
- (2019) Robert Marsland et al. PLoS Computational Biology
- Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- (2019) Laurent Heirendt et al. Nature Protocols
- Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases
- (2019) Serena Sanna et al. NATURE GENETICS
- Use and abuse of correlation analyses in microbial ecology
- (2019) Alex Carr et al. ISME Journal
- Modelling approaches for studying the microbiome
- (2019) Manish Kumar et al. Nature Microbiology
- Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
- (2019) Cecilia Noecker et al. mSystems
- Predicting coexistence in experimental ecological communities
- (2019) Daniel S. Maynard et al. Nature Ecology & Evolution
- Deciphering microbial interactions in synthetic human gut microbiome communities
- (2018) Ophelia S Venturelli et al. Molecular Systems Biology
- Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems
- (2018) Akshit Goyal et al. PHYSICAL REVIEW LETTERS
- Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations
- (2018) Stefan Vet et al. PLoS One
- Urban Diets Linked to Gut Microbiome and Metabolome Alterations in Children: A Comparative Cross-Sectional Study in Thailand
- (2018) Juma Kisuse et al. Frontiers in Microbiology
- Towards predicting the environmental metabolome from metagenomics with a mechanistic model
- (2018) Daniel R. Garza et al. Nature Microbiology
- Metabolic adaptations underlying genome flexibility in prokaryotes
- (2018) Akshit Goyal PLoS Genetics
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- Gut microbiota functions: metabolism of nutrients and other food components
- (2017) Ian Rowland et al. EUROPEAN JOURNAL OF NUTRITION
- Using null models to infer microbial co-occurrence networks
- (2017) Nora Connor et al. PLoS One
- Mapping the ecological networks of microbial communities
- (2017) Yandong Xiao et al. Nature Communications
- Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis
- (2017) Jaeyun Sung et al. Nature Communications
- Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions
- (2017) Babak Momeni et al. eLife
- Love Thy Neighbor: Sharing and Cooperativity in the Gut Microbiota
- (2016) Nathan T. Porter et al. Cell Host & Microbe
- Microbiome-wide association studies link dynamic microbial consortia to disease
- (2016) Jack A. Gilbert et al. NATURE
- Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- (2016) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health
- (2016) Pamela Vernocchi et al. Frontiers in Microbiology
- Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut
- (2016) Audrey Rivière et al. Frontiers in Microbiology
- Using Genome-scale Models to Predict Biological Capabilities
- (2015) Edward J. O’Brien et al. CELL
- Modelling the emergent dynamics and major metabolites of the human colonic microbiota
- (2014) Helen Kettle et al. ENVIRONMENTAL MICROBIOLOGY
- Monoculture parameters successfully predict coculture growth kinetics of Bacteroides thetaiotaomicron and two Bifidobacterium strains
- (2014) A.S. Van Wey et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Functional and phylogenetic assembly of microbial communities in the human microbiome
- (2014) Afrah Shafquat et al. TRENDS IN MICROBIOLOGY
- Understanding the interactions between bacteria in the human gut through metabolic modeling
- (2013) Saeed Shoaie et al. Scientific Reports
- Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
- (2013) Richard R. Stein et al. PLoS Computational Biology
- The Impact of the Gut Microbiota on Human Health: An Integrative View
- (2012) Jose C. Clemente et al. CELL
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Diversity, stability and resilience of the human gut microbiota
- (2012) Catherine A. Lozupone et al. NATURE
- The human microbiome: at the interface of health and disease
- (2012) Ilseung Cho et al. NATURE REVIEWS GENETICS
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- Eating For Two: How Metabolism Establishes Interspecies Interactions in the Gut
- (2011) Michael A. Fischbach et al. Cell Host & Microbe
- Mathematical modelling of carbohydrate degradation by human colonic microbiota
- (2010) Rafael Muñoz-Tamayo et al. JOURNAL OF THEORETICAL BIOLOGY
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- What are the consequences of the disappearing human microbiota?
- (2009) Martin J. Blaser et al. NATURE REVIEWS MICROBIOLOGY
- Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
- (2008) M. A. Oberhardt et al. JOURNAL OF BACTERIOLOGY
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