FreshOmics : A manually curated and standardized –omics database for investigating freshwater microbiomes

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

(2022) Daniel J Rigden et al.   NUCLEIC ACIDS RESEARCH

The Role of Environmental Processes and Geographic Distance in Regulating Local and Regionally Abundant and Rare Bacterioplankton in Lakes

(2022) John K. Pearman et al.   Frontiers in Microbiology

Large-scale sampling of the freshwater microbiome suggests pollution-driven ecosystem changes

(2022) Katrin Premke et al.   ENVIRONMENTAL POLLUTION

The 2021 Nucleic Acids Research database issue and the online molecular biology database collection

(2021) Daniel J Rigden et al.   NUCLEIC ACIDS RESEARCH

Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics

(2021) Valérian Lupo et al.   Frontiers in Microbiology

Bending the Curve of Global Freshwater Biodiversity Loss: An Emergency Recovery Plan

(2020) David Tickner et al.   BIOSCIENCE

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data

(2020) Alise J Ponsero et al.   NUCLEIC ACIDS RESEARCH

HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes

(2020) Jonas Coelho Kasmanas et al.   NUCLEIC ACIDS RESEARCH

Multiple threats imperil freshwater biodiversity in the Anthropocene

(2019) David Dudgeon   CURRENT BIOLOGY

TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes

(2019) Felipe Borim Corrêa et al.   NUCLEIC ACIDS RESEARCH

MGnify: the microbiome analysis resource in 2020

(2019) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

The MAR databases: development and implementation of databases specific for marine metagenomics

(2017) Terje Klemetsen et al.   NUCLEIC ACIDS RESEARCH

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Global Patterns of Extinction Risk in Marine and Non-marine Systems

(2015) Thomas J. Webb et al.   CURRENT BIOLOGY

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

The European Bioinformatics Institute’s data resources 2014

(2013) Catherine Brooksbank et al.   NUCLEIC ACIDS RESEARCH

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE