Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics
Published 2021 View Full Article
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Title
Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 12, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-10-22
DOI
10.3389/fmicb.2021.755101
References
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- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
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- (2017) Daniel H Haft et al. NUCLEIC ACIDS RESEARCH
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