Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

(2020) Elaine Luo et al.   ISME Journal

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

(2019) Ann C. Gregory et al.   CELL

Consistent and correctable bias in metagenomic sequencing experiments

(2019) Michael R McLaren et al.   eLife

Experiment design driven FAIRification of omics data matrices, an exemplar

(2019) Philippe Rocca-Serra et al.   Scientific Data

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

Libra: scalable k-mer based tool for massive all-vs-all metagenome comparisons

(2018) Illyoung Choi et al.   GigaScience

Accessible, curated metagenomic data through ExperimentHub

(2017) Edoardo Pasolli et al.   NATURE METHODS

The MAR databases: development and implementation of databases specific for marine metagenomics

(2017) Terje Klemetsen et al.   NUCLEIC ACIDS RESEARCH

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

(2017) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Environmental drivers of a microbial genomic transition zone in the ocean’s interior

(2017) Daniel R. Mende et al.   Nature Microbiology

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

(2016) Nirav Merchant et al.   PLOS BIOLOGY

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

(2016) Pier Luigi Buttigieg et al.   Journal of Biomedical Semantics

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

(2015) Jessica A Bryant et al.   ISME Journal

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

The ocean sampling day consortium

(2015) Anna Kopf et al.   GigaScience

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011

(2015) Brandon M. Satinsky et al.   Microbiome

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Microbial oceanography and the Hawaii Ocean Time-series programme

(2014) David M. Karl et al.   NATURE REVIEWS MICROBIOLOGY

The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010

(2014) Brandon M Satinsky et al.   Microbiome

The environment ontology: contextualising biological and biomedical entities

(2013) Pier Buttigieg et al.   Journal of Biomedical Semantics

The Units Ontology: a tool for integrating units of measurement in science

(2012) G. V. Gkoutos et al.   Database-The Journal of Biological Databases and Curation

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

(2011) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

(2011) Stephen A. Goff et al.   Frontiers in Plant Science

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH