Wildfire drives the transition from deterministic- to stochastic-dominated community assembly of abundant bacterial in forest soils

Changes in assembly processes of soil microbial communities during secondary succession in two subtropical forests

(2021) Lan Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir

(2021) Pascaline Nyirabuhoro et al.   FEMS MICROBIOLOGY ECOLOGY

Linking soil organic carbon mineralization with soil microbial and substrate properties under warming in permafrost peatlands of Northeastern China

(2021) Yanyu Song et al.   CATENA

Abundance and diversity of carbon-fixing bacterial communities in karst wetland soil ecosystems

(2021) Xiayu Wang et al.   CATENA

Changes in soil bacterial communities with increasing distance from maize roots affected by ammonium and nitrate additions

(2021) Hao Qing Zhang et al.   GEODERMA

Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs

(2021) Qing He et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Rare prokaryotic sub-communities dominate the complexity of ecological networks and soil multinutrient cycling during long-term secondary succession in China's Loess Plateau

(2021) Duntao Shu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes

(2020) Yuting Liang et al.   ENVIRONMENTAL MICROBIOLOGY

Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship

(2020) Jiwen Liu et al.   ISME Journal

Influence of soil structure on the spread of Pseudomonas fluorescens in soil at microscale

(2020) Archana Juyal et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

(2020) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Soil microbiome drives the recovery of ecosystem functions after fire

(2020) E. Pérez-Valera et al.   SOIL BIOLOGY & BIOCHEMISTRY

Century long fertilization reduces stochasticity controlling grassland microbial community succession

(2020) Yuting Liang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient

(2020) Gui-Feng Gao et al.   mSystems

Changes in microbial communities at different soil depths through the first rainy season following severe wildfire in North China artificial Pinus tabulaeformis forest

(2020) Qianqian Qin et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Factors influencing aquatic and terrestrial bacterial community assembly

(2019) Silke Langenheder et al.   Environmental Microbiology Reports

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

(2019) Shuo Jiao et al.   mSystems

Fire as a key driver of Earth's biodiversity

(2019) Tianhua He et al.   BIOLOGICAL REVIEWS

Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning

(2019) Sihang Yang et al.   GLOBAL CHANGE BIOLOGY

Increasing wildfires threaten historic carbon sink of boreal forest soils

(2019) Xanthe J. Walker et al.   NATURE

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity-triggered deterministic bacterial assembly constrains community functions

(2019) Weibing Xun et al.   Nature Communications

Short-term impact of fire-deposited charcoal on soil microbial community abundance and composition in a subtropical plantation in China

(2019) Yuzhe Wang et al.   GEODERMA

Long-term fertilization changes bacterial diversity and bacterial communities in the maize rhizosphere of Chinese Mollisols

(2018) Qingfeng Wang et al.   APPLIED SOIL ECOLOGY

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition

(2018) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Distribution patterns of ammonia-oxidizing archaea and bacteria in sediments of the eastern China marginal seas

(2018) Yuyang Liu et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions

(2018) Youzhi Feng et al.   MOLECULAR ECOLOGY

Spatial heterogeneity and affecting factors of litter organic carbon and total nitrogen over natural spruce-fir mixed forests in northeastern China

(2018) Qianqian Qin et al.   CATENA

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

(2017) Wenxue Wu et al.   ENVIRONMENTAL MICROBIOLOGY

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire

(2017) Sang-Hoon Lee et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

(2017) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest disturbances under climate change

(2017) Rupert Seidl et al.   Nature Climate Change

Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China

(2017) Weidong Chen et al.   Frontiers in Microbiology

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

(2017) Stephanie D. Jurburg et al.   Scientific Reports

Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China

(2016) Jianli Ding et al.   APPLIED SOIL ECOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Soil bacterial community dynamics reflect changes in plant community and soil properties during the secondary succession of abandoned farmland in the Loess Plateau

(2016) Chao Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Labile pyrogenic dissolved organic carbon in major Siberian Arctic rivers: Implications for wildfire-stream metabolic linkages

(2015) Allison N. Myers-Pigg et al.   GEOPHYSICAL RESEARCH LETTERS

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate-specific responses of prokaryotic diversity and structure to nitrogen deposition in the Leymus chinensis steppe

(2014) Minjie Yao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in community assembly may shift the relationship between biodiversity and ecosystem function

(2014) Joseph E. Knelman et al.   Frontiers in Microbiology

Bacterial community in alpine grasslands along an altitudinal gradient on the Tibetan Plateau

(2013) Yanli Yuan et al.   FEMS MICROBIOLOGY ECOLOGY

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

General and rare bacterial taxa demonstrating different temporal dynamic patterns in an activated sludge bioreactor

(2012) Taek-Seung Kim et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Ecological determinism increases with organism size

(2012) Vinicius F. Farjalla et al.   ECOLOGY

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Nitrogen turnover in soil and global change

(2011) Julien Ollivier et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Communities contain closely related species during ecosystem disturbance

(2010) Matthew R. Helmus et al.   ECOLOGY LETTERS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life

(2010) J. P. DeLong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Warming and drying suppress microbial activity and carbon cycling in boreal forest soils

(2008) STEVEN D. ALLISON et al.   GLOBAL CHANGE BIOLOGY