Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions

Mechanisms and ecological implications of the movement of bacteria in soil

(2018) Pu Yang et al.   APPLIED SOIL ECOLOGY

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

(2018) James C. Stegen et al.   Nature Communications

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

(2017) Emily B. Graham et al.   ENVIRONMENTAL MICROBIOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fertilization decreases compositional variation of paddy bacterial community across geographical gradient

(2017) Ruirui Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Balanced Fertilization Decreases Environmental Filtering on Soil Bacterial Community Assemblage in North China

(2017) Youzhi Feng et al.   Frontiers in Microbiology

Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function

(2017) et al.   Processes

Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China

(2016) Jianli Ding et al.   APPLIED SOIL ECOLOGY

The tangled link between β- and γ-diversity: a Narcissus effect weakens statistical inferences in null model analyses of diversity patterns

(2016) Werner Ulrich et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

Crop rotations alter bacterial and fungal diversity in paddy soils across East Asia

(2016) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Aligning the Measurement of Microbial Diversity with Macroecological Theory

(2016) James C. Stegen et al.   Frontiers in Microbiology

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Long-term oil contamination increases deterministic assembly processes in soil microbes

(2015) Yuting Liang et al.   ECOLOGICAL APPLICATIONS

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

(2015) Ye Deng et al.   GLOBAL CHANGE BIOLOGY

Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes

(2015) Ximei Zhang et al.   GLOBAL CHANGE BIOLOGY

Changes in the abundance and structure of bacterial communities under long-term fertilization treatments in a peanut monocropping system

(2015) Wuxing Liu et al.   PLANT AND SOIL

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacillus asahii comes to the fore in organic manure fertilized alkaline soils

(2015) Youzhi Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic structure of arbuscular mycorrhizal community shifts in response to increasing soil fertility

(2015) Yongjun Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

(2014) Francisco Dini-Andreote et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Microbial minorities modulate methane consumption through niche partitioning

(2013) Paul LE Bodelier et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Grassland management influences spatial patterns of soil microbial communities

(2013) Emma J. Sayer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Long-Term Balanced Fertilization Decreases Arbuscular Mycorrhizal Fungal Diversity in an Arable Soil in North China Revealed by 454 Pyrosequencing

(2012) Xiangui Lin et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Hidden patterns of phylogenetic non-stationarity overwhelm comparative analyses of niche conservatism and divergence

(2010) José Alexandre Felizola Diniz-Filho et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

(2009) A Barberán et al.   AQUATIC MICROBIAL ECOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

It's all relative: ranking the diversity of aquatic bacterial communities

(2008) Allison K. Shaw et al.   ENVIRONMENTAL MICROBIOLOGY

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION