Comparative genomic analysis of Babesia duncani responsible for human babesiosis

Assessment of Babesia bovis 6cys A and 6cys B as components of transmission blocking vaccines for babesiosis

(2021) Heba F. Alzan et al.   Parasites & Vectors

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic Comparison of the Performances of De Novo Genome Assemblers for Oxford Nanopore Technology Reads From Piroplasm

(2021) Jinming Wang et al.   Frontiers in Cellular and Infection Microbiology

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys

(2020) Eerik Aunin et al.   PLoS Pathogens

Babesia Life Cycle – When Phylogeny Meets Biology

(2019) Marie Jalovecka et al.   TRENDS IN PARASITOLOGY

Vaccination against babesiosis using recombinant GPI-anchored proteins

(2019) Sarah Nathaly Wieser et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Transmission-Blocking Vaccines: Old Friends and New Prospects

(2019) Festus K. Acquah et al.   INFECTION AND IMMUNITY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

NextPolish: a fast and efficient genome polishing tool for long-read assembly

(2019) Jiang Hu et al.   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Human Babesiosis Caused by a Babesia crassa–Like Pathogen: A Case Series

(2018) Na Jia et al.   CLINICAL INFECTIOUS DISEASES

PERFORMANCE EVALUATION OF A PROTOTYPE ARCHITECT ANTIBODY ASSAY FOR BABESIA MICROTI

(2018) Kevin Cheng et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Discovery of a recombinant Babesia canis supernatant antigen that protects dogs against virulent challenge infection

(2018) K. Moubri et al.   VETERINARY PARASITOLOGY

Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

(2018) Thomas D. Otto et al.   Nature Microbiology

Insights into the evolution and drug susceptibility of Babesia duncani from the sequence of its mitochondrial and apicoplast genomes

(2018) Azan Z. Virji et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution

(2018) Aude Gilabert et al.   PLOS BIOLOGY

The s48/45 six-cysteine proteins: mediators of interaction throughout the Plasmodium life cycle

(2017) Silvia A. Arredondo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Genomic resources for a unique, low-virulence Babesia taxon from China

(2016) Guiquan Guan et al.   Parasites & Vectors

A targeted immunomic approach identifies diagnostic antigens in the human pathogen Babesia microti

(2016) Emmanuel Cornillot et al.   TRANSFUSION

A case of human infection with a novel Babesia species in China

(2016) Su-Qin Man et al.   Infectious Diseases of Poverty

Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

(2016) Joana C. Silva et al.   Scientific Reports

Babesiosis

(2015) Edouard G. Vannier et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

First report of Babesia divergens infection in an HIV patient

(2015) Luis M. González et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Bayesian molecular clock dating of species divergences in the genomics era

(2015) Mario dos Reis et al.   NATURE REVIEWS GENETICS

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

(2014) Thomas D Otto et al.   BMC BIOLOGY

Sequence comparison and phylogenetic analysis by the Maximum Likelihood method of ribosome-inactivating proteins from angiosperms

(2014) Antimo Di Maro et al.   PLANT MOLECULAR BIOLOGY

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts

(2014) Thomas D. Otto et al.   Nature Communications

Comparative transcriptome analysis of geographically distinct virulent and attenuated Babesia bovis strains reveals similar gene expression changes through attenuation

(2013) Monica J Pedroni et al.   BMC GENOMICS

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Babesia: A world emerging

(2012) Leonhard Schnittger et al.   INFECTION GENETICS AND EVOLUTION

Structural and Functional Characterization of Bc28.1, Major Erythrocyte-binding Protein fromBabesia canisMerozoite Surface

(2012) Yin-Shan Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BQP35 is a novel member of the intrinsically unstructured protein (IUP) family which is a potential antigen for the sero-diagnosis of Babesia sp. BQ1 (Lintan) infection

(2012) Guiquan Guan et al.   VETERINARY PARASITOLOGY

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times

(2011) M. d. Reis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

Three Members of the 6-cys Protein Family of Plasmodium Play a Role in Gamete Fertility

(2010) Melissa R. van Dijk et al.   PLoS Pathogens

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Preerythrocytic, live-attenuated Plasmodium falciparum vaccine candidates by design

(2009) K. M. VanBuskirk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Babesia bovis contains an abundant parasite-specific protein-free glycerophosphatidylinositol and the genes predicted for its assembly

(2009) Anabel Elisa Rodríguez et al.   VETERINARY PARASITOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

The Solution Structure of the Adhesion Protein Bd37 from Babesia divergens Reveals Structural Homology with Eukaryotic Proteins Involved in Membrane Trafficking

(2007) Stéphane Delbecq et al.   JOURNAL OF MOLECULAR BIOLOGY