Bayesian molecular clock dating of species divergences in the genomics era
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Title
Bayesian molecular clock dating of species divergences in the genomics era
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 17, Issue 2, Pages 71-80
Publisher
Springer Nature
Online
2015-12-21
DOI
10.1038/nrg.2015.8
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Note: Only part of the references are listed.- Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales
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- (2014) T. A. Heath et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors
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- (2014) B. Misof et al. SCIENCE
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- (2014) N. R. Faria et al. SCIENCE
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- (2014) S. K. Gire et al. SCIENCE
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- (2014) Remco Bouckaert et al. PLoS Computational Biology
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- (2014) Christy A. Hipsley et al. Frontiers in Genetics
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- (2013) C. G. Schrago et al. JOURNAL OF EVOLUTIONARY BIOLOGY
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- (2013) Markos A. Alexandrou et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
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- (2013) Z. J. Tseng et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- (2013) Natalia Rybczynski et al. Nature Communications
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- (2013) Graham J. Slater Methods in Ecology and Evolution
- Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees
- (2013) Robert S. Sansom et al. Scientific Reports
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- (2009) Jun Inoue et al. SYSTEMATIC BIOLOGY
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- (2008) Richard E. Green et al. CELL
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- (2008) Rolando González-José et al. NATURE
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