Genomic resources for a unique, low-virulence Babesia taxon from China

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Using Genome-scale Models to Predict Biological Capabilities

(2015) Edward J. O’Brien et al.   CELL

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genomic evidence for adaptation by gene duplication

(2014) Wenfeng Qian et al.   GENOME RESEARCH

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction

(2014) A. P. Jackson et al.   NUCLEIC ACIDS RESEARCH

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Whole Genome Mapping and Re-Organization of the Nuclear and Mitochondrial Genomes of Babesia microti Isolates

(2013) Emmanuel Cornillot et al.   PLoS One

RPS8—a New Informative DNA Marker for Phylogeny of Babesia and Theileria Parasites in China

(2013) Zhan-Cheng Tian et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Antigenic variation and the generation of diversity in malaria parasites

(2012) Laura A Kirkman et al.   CURRENT OPINION IN MICROBIOLOGY

Bovine babesiosis in the 21st century: Advances in biology and functional genomics

(2012) Sejal Gohil et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti†

(2012) Emmanuel Cornillot et al.   NUCLEIC ACIDS RESEARCH

Gene duplication as a mechanism of genomic adaptation to a changing environment

(2012) F. A. Kondrashov   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BQP35 is a novel member of the intrinsically unstructured protein (IUP) family which is a potential antigen for the sero-diagnosis of Babesia sp. BQ1 (Lintan) infection

(2012) Guiquan Guan et al.   VETERINARY PARASITOLOGY

Continuous in vitro cultivation of a recently identified Babesia that infects small ruminants in China

(2012) Guiquan Guan et al.   VETERINARY PARASITOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A new ovine Babesia species transmitted by Hyalomma anatolicum anatolicum

(2009) Guiquan Guan et al.   EXPERIMENTAL PARASITOLOGY

Babesia microti-Group Parasites Compared Phylogenetically by Complete Sequencing of the CCT.ETA. Gene in 36 Isolates

(2009) Rui NAKAJIMA et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Transfection systems for Babesia bovis: A review of methods for the transient and stable expression of exogenous genes

(2009) Carlos E. Suarez et al.   VETERINARY PARASITOLOGY

Stable expression of a GFP-BSD fusion protein in Babesia bovis merozoites

(2008) Carlos E. Suarez et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Transient transfection of purified Babesia bovis merozoites

(2007) Carlos E. Suarez et al.   EXPERIMENTAL PARASITOLOGY