A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2

Higher levels of bacterial DNA in serum associate with severe and fatal COVID‐19

(2022) Nonhlanhla Lunjani et al.   ALLERGY

Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19

(2021) Yun Kit Yeoh et al.   GUT

Virus Infections and Host Metabolism—Can We Manage the Interactions?

(2021) Deepak Sumbria et al.   Frontiers in Immunology

Mechanisms of microbe-immune system dialogue within the skin

(2021) Nonhlanhla Lunjani et al.   GENES AND IMMUNITY

Metabolite profiles associated with disease progression in influenza infection

(2021) Chris H. Wendt et al.   PLoS One

Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1)

(2021) José Alberto Choreño-Parra et al.   Frontiers in Immunology

Long‐term disruption of cytokine signalling networks is evident in patients who required hospitalization for SARS‐CoV‐2 infection

(2021) Sinead Ahearn‐Ford et al.   ALLERGY

Gut-microbiota-targeted diets modulate human immune status

(2021) Hannah C. Wastyk et al.   CELL

Endothelial cell dysfunction, coagulation, and angiogenesis in coronavirus disease 2019 (COVID-19)

(2021) Amir Hossein Norooznezhad et al.   MICROVASCULAR RESEARCH

Distinct systemic and mucosal immune responses during acute SARS-CoV-2 infection

(2021) Nikaïa Smith et al.   NATURE IMMUNOLOGY

Impact of Bacterial Metabolites on Gut Barrier Function and Host Immunity: A Focus on Bacterial Metabolism and Its Relevance for Intestinal Inflammation

(2021) Naschla Gasaly et al.   Frontiers in Immunology

Gut Microbiota-Modulated Metabolomic Profiling Shapes the Etiology and Pathogenesis of Autoimmune Diseases

(2021) Yi-Wen Tsai et al.   Microorganisms

Spermidine and spermine exert protective effects within the lung

(2021) Marcin Wawrzyniak et al.   Pharmacology Research & Perspectives

T helper type (Th1/Th2) responses to SARS-CoV-2 and influenza A (H1N1) virus: From cytokines produced to immune responses

(2021) Elahe Aleebrahim-Dehkordi et al.   TRANSPLANT IMMUNOLOGY

Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries

(2020) Tarini Shankar Ghosh et al.   GUT

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

(2020) Chaolin Huang et al.   LANCET

Immune response to SARS‐CoV‐2 and mechanisms of immunopathological changes in COVID‐19

(2020) Ahmet Kursat Azkur et al.   ALLERGY

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19

(2020) Daniel Blanco-Melo et al.   CELL

Bacterial metabolism of bile acids promotes generation of peripheral regulatory T cells

(2020) Clarissa Campbell et al.   NATURE

Adjusting for age improves identification of gut microbiome alterations in multiple diseases

(2020) Tarini S Ghosh et al.   eLife

Immunology of COVID‐19: mechanisms, clinical outcome, diagnostics and perspectives – a report of the European Academy of Allergy and Clinical Immunology (EAACI)

(2020) M Sokolowska et al.   ALLERGY

Distribution of ACE2, CD147, CD26 and other SARS‐CoV‐2 associated molecules in tissues and immune cells in health and in asthma, COPD, obesity, hypertension, and COVID‐19 risk factors

(2020) U. Radzikowska et al.   ALLERGY

Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study

(2020) Adam G Clooney et al.   GUT

The microbiome and cytosolic innate immune receptors

(2020) Timur Liwinski et al.   IMMUNOLOGICAL REVIEWS

Factors associated with COVID-19-related death using OpenSAFELY

(2020) Elizabeth J. Williamson et al.   NATURE

Longitudinal analyses reveal immunological misfiring in severe COVID-19

(2020) Carolina Lucas et al.   NATURE

Microbial tryptophan metabolites regulate gut barrier function via the aryl hydrocarbon receptor

(2020) Samantha A. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications

(2020) Divij Mathew et al.   SCIENCE

Autoantibodies against type I IFNs in patients with life-threatening COVID-19

(2020) Paul Bastard et al.   SCIENCE

Large-Scale Multi-omic Analysis of COVID-19 Severity

(2020) Katherine A. Overmyer et al.   Cell Systems

Intranasal Bifidobacterium longum protects against viral-induced lung inflammation and injury in a murine model of lethal influenza infection

(2020) David Groeger et al.   EBioMedicine

Metagenomic analysis reveals distinct patterns of gut lactobacillus prevalence, abundance, and geographical variation in health and disease

(2020) Tarini Shankar Ghosh et al.   Gut Microbes

The Healthy Microbiome—What Is the Definition of a Healthy Gut Microbiome?

(2020) Fergus Shanahan et al.   GASTROENTEROLOGY

Tryptophan Metabolism as a Pharmacological Target

(2020) Morgane Modoux et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

The neuroactive potential of the human gut microbiota in quality of life and depression

(2019) Mireia Valles-Colomer et al.   Nature Microbiology

Epithelial cell–derived cytokines: more than just signaling the alarm

(2019) Florence Roan et al.   JOURNAL OF CLINICAL INVESTIGATION

Antibiotics-Driven Gut Microbiome Perturbation Alters Immunity to Vaccines in Humans

(2019) Thomas Hagan et al.   CELL

TSLP: from allergy to cancer

(2019) Jonathan Corren et al.   NATURE IMMUNOLOGY

Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowel Syndrome and Bile Acid Malabsorption

(2019) Ian B. Jeffery et al.   GASTROENTEROLOGY

Obesity and disease severity magnify disturbed microbiome-immune interactions in asthma patients

(2019) David Michalovich et al.   Nature Communications

The Ruminococci: key symbionts of the gut ecosystem

(2018) Alex J. La Reau et al.   JOURNAL OF MICROBIOLOGY

Tezepelumab in Adults with Uncontrolled Asthma

(2017) Jonathan Corren et al.   NEW ENGLAND JOURNAL OF MEDICINE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

SPINGO: a rapid species-classifier for microbial amplicon sequences

(2015) Guy Allard et al.   BMC BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Intestinal transport and metabolism of bile acids

(2014) Paul A. Dawson et al.   JOURNAL OF LIPID RESEARCH

Functions of plasmalogen lipids in health and disease

(2012) Nancy E. Braverman et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Catabolic Pathway for the Production of Skatole and Indoleacetic Acid by the Acetogen Clostridium drakei, Clostridium scatologenes, and Swine Manure

(2008) T. R. Whitehead et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS