Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62

Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement

(2022) Raz Avni et al.   PLANT JOURNAL

Creation and judicious application of a wheat resistance gene atlas

(2021) Amber N. Hafeez et al.   Molecular Plant

Tandem protein kinases emerge as new regulators of plant immunity

(2021) Valentyna Klymiuk et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A recombined Sr26 and Sr61 disease resistance gene stack in wheat encodes unrelated NLR genes

(2021) Jianping Zhang et al.   Nature Communications

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

(2021) Kumar Gaurav et al.   NATURE BIOTECHNOLOGY

A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew

(2020) Ping Lu et al.   Nature Communications

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

The complex architecture and epigenomic impact of plant T-DNA insertions

(2019) Florian Jupe et al.   PLoS Genetics

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

(2019) Sanu Arora et al.   NATURE BIOTECHNOLOGY

Durum wheat genome highlights past domestication signatures and future improvement targets

(2019) Marco Maccaferri et al.   NATURE GENETICS

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Wheat gene Sr60 encodes a protein with two putative kinase domains that confers resistance to stem rust

(2019) Shisheng Chen et al.   NEW PHYTOLOGIST

An efficient and reproducible Agrobacterium-mediated transformation method for hexaploid wheat (Triticum aestivum L.)

(2019) Sadiye Hayta et al.   Plant Methods

Climate change impacts the spread potential of wheat stem rust, a significant crop disease

(2019) Marje Prank et al.   Environmental Research Letters

Pm21 from Haynaldia villosa Encodes a CC-NBS-LRR Protein Conferring Powdery Mildew Resistance in Wheat

(2018) Liping Xing et al.   Molecular Plant

Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function

(2018) Jiorgos Kourelis et al.   PLANT CELL

Identification and characterization of wheat stem rust resistance gene Sr21 effective against the Ug99 race group at high temperature

(2018) Shisheng Chen et al.   PLoS Genetics

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

(2018) Hong-Qing Ling et al.   NATURE

Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family

(2018) Valentina Klymiuk et al.   Nature Communications

The coiled-coil NLR Rph1, confers leaf rust resistance in barley cultivar Sudan

(2018) Peter Michael Dracatos et al.   PLANT PHYSIOLOGY

Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from section Sitopsis species of Aegilops

(2018) Yuka Miki et al.   DNA RESEARCH

Deadly new wheat disease threatens Europe’s crops

(2017) Shaoni Bhattacharya   NATURE

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly

(2017) Anupriya Kaur Thind et al.   NATURE BIOTECHNOLOGY

Multiple strategies for pathogen perception by plant immune receptors

(2017) Stella Cesari   NEW PHYTOLOGIST

Characterization of Puccinia graminis f. sp. tritici isolates derived from an unusual wheat stem rust outbreak in Germany in 2013

(2017) P. D. Olivera Firpo et al.   PLANT PATHOLOGY

Discovery and characterization of two new stem rust resistance genes in Aegilops sharonensis

(2017) Guotai Yu et al.   THEORETICAL AND APPLIED GENETICS

Genome Targeted Introgression of Resistance to African Stem Rust from into Bread Wheat

(2017) Eitan Millet et al.   Plant Genome

Comparative Mapping and Targeted-Capture Sequencing of the Gametocidal Loci in

(2017) Surbhi Grewal et al.   Plant Genome

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

(2017) Sebastian Beier et al.   Scientific Data

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Compacting de Bruijn graphs from sequencing data quickly and in low memory

(2016) Rayan Chikhi et al.   BIOINFORMATICS

Genetic diversity of spring wheat from Kazakhstan and Russia for resistance to stem rust Ug99

(2016) Vladimir Shamanin et al.   EUPHYTICA

Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

(2016) Burkhard Steuernagel et al.   NATURE BIOTECHNOLOGY

Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilopsspp.) into chromosomes and exploring their synteny with wheat

(2016) István Molnár et al.   PLANT JOURNAL

BFC: correcting Illumina sequencing errors

(2015) Heng Li   BIOINFORMATICS

The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants

(2015) Guoxun Wang et al.   Cell Host & Microbe

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

(2015) John W Moore et al.   NATURE GENETICS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Phenotypic and Genotypic Characterization of Race TKTTF of Puccinia graminis f. sp. tritici that Caused a Wheat Stem Rust Epidemic in Southern Ethiopia in 2013–14

(2015) Pablo Olivera et al.   PHYTOPATHOLOGY

Mapping the ‘breaker’ element of the gametocidal locus proximal to a block of sub-telomeric heterochromatin on the long arm of chromosome 4Ssh of Aegilops sharonensis

(2015) Emilie Knight et al.   THEORETICAL AND APPLIED GENETICS

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

(2015) Jarrod A Chapman et al.   GENOME BIOLOGY

The wheat Sr50 gene reveals rich diversity at a cereal disease resistance locus

(2015) Rohit Mago et al.   Nature Plants

Introgression of leaf rust and stripe rust resistance from Sharon goatgrass (Aegilops sharonensis Eig) into bread wheat (Triticum aestivum L.)

(2014) E. Millet et al.   GENOME

Resistance ofAegilopsSpecies from Israel to Widely Virulent African and Israeli Races of the Wheat Stem Rust Pathogen

(2014) Jeness C. Scott et al.   PLANT DISEASE

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

Barley whole exome capture: a tool for genomic research in the genusHordeumand beyond

(2013) Martin Mascher et al.   PLANT JOURNAL

FISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy

(2013) Debora Giorgi et al.   PLoS One

Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group

(2013) C. Saintenac et al.   SCIENCE

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

SIFT web server: predicting effects of amino acid substitutions on proteins

(2012) Ngak-Leng Sim et al.   NUCLEIC ACIDS RESEARCH

Diversity, classification and function of the plant protein kinase superfamily

(2012) M. D. Lehti-Shiu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

(2011) María Muñoz-Amatriaín et al.   Plant Genome

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Aegilops sharonensis: Origin, genetics, diversity, and potential for wheat improvement

(2009) Pablo D. Olivera et al.   Botany

Autophagic Components Contribute to Hypersensitive Cell Death in Arabidopsis

(2009) Daniel Hofius et al.   CELL

Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis

(2009) Gemma L. Holliday et al.   JOURNAL OF MOLECULAR BIOLOGY

Detection of Virulence to Resistance Gene Sr36 Within the TTKS Race Lineage of Puccinia graminis f. sp. tritici

(2009) Y. Jin et al.   PLANT DISEASE

Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes

(2009) M. D. Lehti-Shiu et al.   PLANT PHYSIOLOGY

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

(2008) Hana Šimková et al.   BMC GENOMICS

From Guard to Decoy: A New Model for Perception of Plant Pathogen Effectors

(2008) R. A.L. van der Hoorn et al.   PLANT CELL

Detection of Virulence to Resistance GeneSr24Within Race TTKS ofPuccinia graminisf. sp.tritici

(2008) Y. Jin et al.   PLANT DISEASE

High-throughput Agrobacterium-mediated barley transformation

(2008) Joanne G Bartlett et al.   Plant Methods

Acc homoeoloci and the evolution of wheat genomes

(2008) D. Chalupska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA