Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing

(2016) Kamil Witek et al.   NATURE BIOTECHNOLOGY

NLR-parser: rapid annotation of plant NLR complements

(2015) Burkhard Steuernagel et al.   BIOINFORMATICS

Phenotypic and Genotypic Characterization of Race TKTTF of Puccinia graminis f. sp. tritici that Caused a Wheat Stem Rust Epidemic in Southern Ethiopia in 2013–14

(2015) Pablo Olivera et al.   PHYTOPATHOLOGY

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq

(2014) Giuseppe Andolfo et al.   BMC PLANT BIOLOGY

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing

(2014) I. M. Henry et al.   PLANT CELL

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Identification of a robust molecular marker for the detection of the stem rust resistance gene Sr45 in common wheat

(2014) Sambasivam Periyannan et al.   THEORETICAL AND APPLIED GENETICS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

(2013) Florian Jupe et al.   PLANT JOURNAL

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

(2013) M.-C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group

(2013) C. Saintenac et al.   SCIENCE

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Savant Genome Browser 2: visualization and analysis for population-scale genomics

(2012) M. Fiume et al.   NUCLEIC ACIDS RESEARCH

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

(2011) Eduard D Akhunov et al.   BMC GENOMICS

Genetics of Resistance to Race TTKSK ofPuccinia graminisf. sp.triticiinTriticum monococcum

(2011) M. N. Rouse et al.   PHYTOPATHOLOGY

Stem Rust Resistance in A-Genome Diploid Relatives of Wheat

(2011) M. N. Rouse et al.   PLANT DISEASE

A robust molecular marker for the detection of shortened introgressed segment carrying the stem rust resistance gene Sr22 in common wheat

(2010) Sambasivam K. Periyannan et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE