Genome-wide characterization of the TALE homeodomain family and the KNOX-BLH interaction network in tomato

Genome-Wide Identification and Characterization of TALE Superfamily Genes in Soybean (Glycine max L.)

(2021) Liang Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Novel assays to monitor gene expression and protein-protein interactions in rice using the bioluminescent protein, NanoLuc

(2021) Ken-ichiro Taoka et al.   Plant Biotechnology

ARABIDOPSIS THALIANA HOMEOBOX GENE 1controls plant architecture by locally restricting environmental responses

(2021) Mahwish Ejaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tomato SlBL4 plays an important role in fruit pedicel organogenesis and abscission

(2021) Fang Yan et al.   Horticulture Research

Leaf form diversification in an ornamental heirloom tomato results from alterations in two different HOMEOBOX genes

(2021) Hokuto Nakayama et al.   CURRENT BIOLOGY

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Ethylene‐activated MdPUB24 mediates ubiquitination of MdBEL7 to promote chlorophyll degradation in apple fruit

(2021) Yun Wei et al.   PLANT JOURNAL

Hormonal Regulatory Patterns of LaKNOXs and LaBEL1 Transcription Factors Reveal Their Potential Role in Stem Bulblet Formation in LA Hybrid Lily

(2021) Yue Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A Self-Activation Loop Maintains Meristematic Cell Fate for Branching

(2020) Xiuwei Cao et al.   CURRENT BIOLOGY

The Class II KNOX transcription factors KNAT3 and KNAT7 synergistically regulate monolignol biosynthesis in Arabidopsis

(2020) Wenqi Qin et al.   JOURNAL OF EXPERIMENTAL BOTANY

SlBL4 regulates chlorophyll accumulation, chloroplast development and cell wall metabolism in tomato fruit

(2020) Fang Yan et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

(2020) Yan Li et al.   Molecular Plant

Functional divergence and adaptive selection of KNOX gene family in plants

(2020) Lingyan Meng et al.   Open Life Sciences

Integration of pluripotency pathways regulates stem cell maintenance in theArabidopsisshoot meristem

(2020) Ying Hua Su et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

SAW homeodomain transcription factors regulate initiation of leaf margin serrations

(2020) Hyung-Woo Jeon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha

(2019) Haruka Arai et al.   JOURNAL OF PLANT RESEARCH

A Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion And Wall Stiffness

(2019) Shaogan Wang et al.   PLANT PHYSIOLOGY

KNAT 2/6b , a class I KNOX gene, impedes xylem differentiation by regulating NAC domain transcription factors in poplar

(2019) Yanqiu Zhao et al.   NEW PHYTOLOGIST

CDD/SPARCLE: the conserved domain database in 2020

(2019) Shennan Lu et al.   NUCLEIC ACIDS RESEARCH

The Class II KNOX genes KNAT3 and KNAT7 work cooperatively to influence deposition of secondary cell walls that provide mechanical support to Arabidopsis stems

(2019) Shumin Wang et al.   PLANT JOURNAL

SKLPT imaging: Efficient in vivo pre-evaluation of genome-editing modules using fluorescent protein with peroxisome targeting signal

(2018) Ryota Konno et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network

(2018) Simon Scofield et al.   DEVELOPMENT

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DELLA-ARF/IAA Interaction Mediates Crosstalk between Gibberellin and Auxin Signaling in Controlling Fruit Initiation in Solanum lycopersicum

(2018) Jianhong Hu et al.   PLANT CELL

BEL1-LIKE HOMEODOMAIN 11 regulates chloroplast development and chlorophyll synthesis in tomato fruit

(2018) Lanhuan Meng et al.   PLANT JOURNAL

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening

(2018) Yoshihito Shinozaki et al.   Nature Communications

Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex

(2018) Vijay Dalal et al.   Scientific Reports

FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis

(2018) Lu Liu et al.   Cell Reports

Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato

(2018) Yoshihito Shinozaki et al.   Scientific Reports

KNOTTED1 Cofactors, BLH12 and BLH14, Regulate Internode Patterning and Vein Anastomosis in Maize

(2017) Katsutoshi Tsuda et al.   PLANT CELL

The Origin of Floral Organ Identity Quartets

(2017) Philip Ruelens et al.   PLANT CELL

The mobile RNAs, StBEL11 and StBEL29, suppress growth of tubers in potato

(2017) Tejashree H. Ghate et al.   PLANT MOLECULAR BIOLOGY

Gene Regulatory Networks for the Haploid-to-Diploid Transition of Chlamydomonas reinhardtii

(2017) Sunjoo Joo et al.   PLANT PHYSIOLOGY

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis

(2016) Stefano Bencivenga et al.   DEVELOPMENTAL CELL

Evolutionary Dynamics of Floral Homeotic Transcription Factor Protein–Protein Interactions

(2016) Madelaine Bartlett et al.   MOLECULAR BIOLOGY AND EVOLUTION

KNAT3/4/5-like class 2 KNOX transcription factors are involved inMedicago truncatulasymbiotic nodule organ development

(2016) Elisabetta Di Giacomo et al.   NEW PHYTOLOGIST

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction

(2016) Nelly A. Horst et al.   Nature Plants

Homeodomain proteins: an update

(2015) Thomas R. Bürglin et al.   CHROMOSOMA

Diverse functions of KNOX transcription factors in the diploid body plan of plants

(2015) Katsutoshi Tsuda et al.   CURRENT OPINION IN PLANT BIOLOGY

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

In planta comparative analysis of improved green fluorescent proteins with reference to fluorescence intensity and bimolecular fluorescence complementation ability

(2015) Yuta Fujii et al.   Plant Biotechnology

Ectopic expression a tomato KNOX Gene Tkn4 affects the formation and the differentiation of meristems and vasculature

(2015) Fang Yan et al.   PLANT MOLECULAR BIOLOGY

Repression of lateral organ boundary genes by PENNYWISE and POUND-FOOLISH is essential for meristem maintenance and flowering in Arabidopsis thaliana1

(2015) Madiha Khan et al.   PLANT PHYSIOLOGY

Floral induction in Arabidopsis thaliana by FLOWERING LOCUS T requires direct repression of BLADE-ON-PETIOLE genes by homeodomain protein PENNYWISE

(2015) Fernando Andres et al.   PLANT PHYSIOLOGY

Targets of the StBEL5 Transcription Factor Include the FT Ortholog StSP6A

(2015) Pooja Sharma et al.   PLANT PHYSIOLOGY

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

(2015) Chihiro Furumizu et al.   PLoS Genetics

Evolution, diversification, and expression of KNOX proteins in plants

(2015) Jie Gao et al.   Frontiers in Plant Science

Transcriptome Profiling of Tomato Fruit Development Reveals Transcription Factors Associated with Ascorbic Acid, Carotenoid and Flavonoid Biosynthesis

(2015) Jie Ye et al.   PLoS One

BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 Interact and Regulate Secondary Cell Wall Formation via Repression ofREVOLUTA

(2014) Yuanyuan Liu et al.   PLANT CELL

KNOXgenes influence a gradient of fruit chloroplast development through regulation ofGOLDEN2-LIKEexpression in tomato

(2014) Satya Swathi Nadakuduti et al.   PLANT JOURNAL

Transcriptional, Posttranscriptional, and Posttranslational Regulation ofSHOOT MERISTEMLESSGene Expression in Arabidopsis Determines Gene Function in the Shoot Apex

(2014) José Antonio Aguilar-Martínez et al.   PLANT PHYSIOLOGY

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape

(2014) Y. Ichihashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development

(2014) Nicolas Arnaud et al.   Frontiers in Plant Science

MIXTA-Like Transcription Factors and WAX INDUCER1/SHINE1 Coordinately Regulate Cuticle Development inArabidopsisandTorenia fournieri

(2013) Yoshimi Oshima et al.   PLANT CELL

BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis

(2013) Dachan Kim et al.   PLANT JOURNAL

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus

(2012) Eryang Li et al.   NEW PHYTOLOGIST

ATH1 and KNAT2 proteins act together in regulation of plant inflorescence architecture

(2011) Yang Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Role of PENNYWISE and POUND-FOOLISH in the Maintenance of the Shoot Apical Meristem in Arabidopsis

(2011) N. Ung et al.   PLANT PHYSIOLOGY

Antagonistic Interaction of BLADE-ON-PETIOLE1 and 2 with BREVIPEDICELLUS and PENNYWISE Regulates Arabidopsis Inflorescence Architecture

(2011) M. Khan et al.   PLANT PHYSIOLOGY

Programmed induction of endoreduplication by DNA double-strand breaks in Arabidopsis

(2011) S. Adachi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chaperonins Facilitate KNOTTED1 Cell-to-Cell Trafficking and Stem Cell Function

(2011) X. M. Xu et al.   SCIENCE

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

KNOX genes: versatile regulators of plant development and diversity

(2010) A. Hay et al.   DEVELOPMENT

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Binding properties of the complex formed by the Arabidopsis TALE homeodomain proteins STM and BLH3 to DNA containing single and double target sites

(2009) Ivana L. Viola et al.   BIOCHIMIE

Coordination of leaf development via regulation of KNOX1 genes

(2009) Naoyuki Uchida et al.   JOURNAL OF PLANT RESEARCH

A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

(2009) K. Mukherjee et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stage-Specific Regulation of Solanum lycopersicum Leaf Maturation by Class 1 KNOTTED1-LIKE HOMEOBOX Proteins

(2009) E. Shani et al.   PLANT CELL

Shoot apical meristem function in Arabidopsis requires the combined activities of three BEL1-like homeodomain proteins

(2009) Bas Rutjens et al.   PLANT JOURNAL

Early Sexual Origins of Homeoprotein Heterodimerization and Evolution of the Plant KNOX/BELL Family

(2008) Jae-Hyeok Lee et al.   CELL

Natural Variation in Leaf Morphology Results from Mutation of a Novel KNOX Gene

(2008) Seisuke Kimura et al.   CURRENT BIOLOGY

Class 1 KNOX genes are not involved in shoot development in the mossPhyscomitrella patensbut do function in sporophyte development

(2008) Keiko Sakakibara et al.   EVOLUTION & DEVELOPMENT

ARABIDOPSIS THALIANA HOMEOBOX GENE1 Establishes the Basal Boundaries of Shoot Organs and Controls Stem Growth

(2008) C. Gomez-Mena et al.   PLANT CELL

Interaction of KNAT6 and KNAT2 with BREVIPEDICELLUS and PENNYWISE in Arabidopsis Inflorescences

(2008) L. Ragni et al.   PLANT CELL

A novel role of BELL1-like homeobox genes, PENNYWISE and POUND-FOOLISH, in floral patterning

(2008) Lifeng Yu et al.   PLANTA