Evolutionary Dynamics of Floral Homeotic Transcription Factor Protein–Protein Interactions

The MaizePI/GLOOrthologZmm16/sterile tassel silky ear1Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development

(2015) Madelaine E. Bartlett et al.   PLANT CELL

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

(2015) Chihiro Furumizu et al.   PLoS Genetics

DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution

(2014) Rainer Melzer et al.   ANNALS OF BOTANY

A revised evolutionary history of Poales: origins and diversification

(2014) Yanis Bouchenak-Khelladi et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Arguments in the evo-devo debate: say it with flowers!

(2014) Serena Della Pina et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional and hormonal regulation of petal and stamen development by STAMENLESS, the tomato (Solanum lycopersicum L.) orthologue to the B-class APETALA3 gene

(2014) Muriel Quinet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cryptic genetic variation: evolution's hidden substrate

(2014) Annalise B. Paaby et al.   NATURE REVIEWS GENETICS

Arabidopsis SEPALLATA proteins differ in cooperative DNA-binding during the formation of floral quartet-like complexes

(2014) Khushboo Jetha et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Structural Basis for the Oligomerization of the MADS Domain Transcription Factor SEPALLATA3 in Arabidopsis

(2014) S. Puranik et al.   PLANT CELL

Deciphering the Physalis floridana Double-Layered-Lantern1 Mutant Provides Insights into Functional Divergence of the GLOBOSA Duplicates within the Solanaceae

(2014) J.-S. Zhang et al.   PLANT PHYSIOLOGY

Functional specialization of stomatal bHLHs through modification of DNA-binding and phosphoregulation potential

(2014) K. A. Davies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Promiscuous Intermediate Underlies the Evolution of LEAFY DNA Binding Specificity

(2014) C. Sayou et al.   SCIENCE

Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells

(2014) O. S. Lau et al.   SCIENCE

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK

(2013) Rajinder Singh et al.   NATURE

Gene networks controllingArabidopsis thalianaflower development

(2013) Diarmuid Seosamh Ó'Maoiléidigh et al.   NEW PHYTOLOGIST

The seirena B Class Floral Homeotic Mutant of California Poppy (Eschscholzia californica) Reveals a Function of the Enigmatic PI Motif in the Formation of Specific Multimeric MADS Domain Protein Complexes

(2013) M. Lange et al.   PLANT CELL

MADS Domain Transcription Factors Mediate Short-Range DNA Looping That Is Essential for Target Gene Expression in Arabidopsis

(2013) M. A. Mendes et al.   PLANT CELL

A Change in SHATTERPROOF Protein Lies at the Origin of a Fruit Morphological Novelty and a New Strategy for Seed Dispersal in Medicago Genus

(2013) C. Fourquin et al.   PLANT PHYSIOLOGY

Protein change in plant evolution: tracing one thread connecting molecular and phenotypic diversity

(2013) Madelaine E. Bartlett et al.   Frontiers in Plant Science

Protein Modularity, Cooperative Binding, and Hybrid Regulatory States Underlie Transcriptional Network Diversification

(2012) Christopher R. Baker et al.   CELL

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

(2012) C. Smaczniak et al.   DEVELOPMENT

Molecular and Functional Evolution of Class I Chitinases for Plant Carnivory in the Caryophyllales

(2012) T. Renner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Sub- and neo-functionalization ofAPETALA3paralogs have contributed to the evolution of novel floral organ identity inAquilegia(columbine, Ranunculaceae)

(2012) Bharti Sharma et al.   NEW PHYTOLOGIST

Inhibition of the function of class IIa HDACs by blocking their interaction with MEF2

(2012) Nimanthi Jayathilaka et al.   NUCLEIC ACIDS RESEARCH

Functional specialization of duplicated AP3-like genes inMedicago truncatula

(2012) Edelín Roque et al.   PLANT JOURNAL

Loss of deeply conserved C-class floral homeotic gene function and C- and E-class protein interaction in a double-flowered ranunculid mutant

(2012) K. D. Galimba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory switch enforced by basic helix-loop-helix and ACT-domain mediated dimerizations of the maize transcription factor R

(2012) Que Kong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

(2012) C. Smaczniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

(2012) Ben Murrell et al.   PLoS Computational Biology

Robustness and evolvability in the B-system of flower development

(2011) K. Geuten et al.   ANNALS OF BOTANY

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

(2011) Matthew Slattery et al.   CELL

Functional analysis reveals the possible role of the C-terminal sequences and PI motif in the function of lily (Lilium longiflorum) PISTILLATA (PI) orthologues

(2011) M.-K. Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolutionary History and Complementary Selective Relaxation of the Duplicated PI Genes in Grasses

(2011) Ruo-Xun Wei et al.   Journal of Integrative Plant Biology

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

(2011)   NEW PHYTOLOGIST

BARREN STALK FASTIGIATE1 Is an AT-Hook Protein Required for the Formation of Maize Ears

(2011) Andrea Gallavotti et al.   PLANT CELL

Evolution of a derived protein–protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation

(2011) Kathryn J. Brayer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

(2010) Thomas J. Givnish et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Interactions among Proteins of Floral MADS-Box Genes in Basal Eudicots: Implications for Evolution of the Regulatory Network for Flower Development

(2010) C. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hidden Variability of Floral Homeotic B Genes in Solanaceae Provides a Molecular Basis for the Evolution of Novel Functions

(2010) K. Geuten et al.   PLANT CELL

Single amino acid change alters the ability to specify male or female organ identity

(2010) C. A. Airoldi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction

(2010) Aalt D. J. van Dijk et al.   PLoS Computational Biology

Flower Evolution: The Origin and Subsequent Diversification of the Angiosperm Flower

(2009) Chelsea D. Specht et al.   Annual Review of Ecology Evolution and Systematics

Positive selection and ancient duplications in the evolution of class B floral homeotic genes of orchids and grasses

(2009) Mariana Mondragón-Palomino et al.   BMC EVOLUTIONARY BIOLOGY

Reconstitution of ‘floral quartets’ in vitro involving class B and class E floral homeotic proteins

(2009) Rainer Melzer et al.   NUCLEIC ACIDS RESEARCH

A simple, flexible and efficient PCR-fusion/Gateway cloning procedure for gene fusion, site-directed mutagenesis, short sequence insertion and domain deletions and swaps

(2009) Ivan I Atanassov et al.   Plant Methods

The ‘ABC’ of MADS domain protein behaviour and interactions

(2009) Richard G.H. Immink et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The ABC model and the diversification of floral organ identity

(2009) Amy Litt et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower

(2009) Kerstin Kaufmann et al.   PLOS BIOLOGY

Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins

(2009) Thorsten Lenser et al.   PLoS Computational Biology

THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?

(2008) David L. Stern et al.   EVOLUTION

RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION

(2008) Vincent J. Lynch et al.   EVOLUTION

A Phylogenetic Analysis of the Evolution of Wind Pollination in the Angiosperms

(2008) Jannice Friedman et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Interaction study of MADS-domain proteins in tomato

(2008) Charles H. Leseberg et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus

(2008) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactions of B-class complex proteins involved in tepal development in Phalaenopsis orchid

(2008) Wen-Chieh Tsai et al.   PLANT AND CELL PHYSIOLOGY

Unequal Genetic Redundancy of Rice PISTILLATA Orthologs, OsMADS2 and OsMADS4, in Lodicule and Stamen Development

(2008) S.-G. Yao et al.   PLANT AND CELL PHYSIOLOGY

SCREAM/ICE1 and SCREAM2 Specify Three Cell-State Transitional Steps Leading to Arabidopsis Stomatal Differentiation

(2008) M. M. Kanaoka et al.   PLANT CELL

Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals

(2008) V. J. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Eukaryotic Transcription Circuits

(2008) B. B. Tuch et al.   SCIENCE