- Home
- Publications
- Publication Search
- Publication Details
Title
Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes
Authors
Keywords
-
Journal
MOLECULAR BIOLOGY AND EVOLUTION
Volume 39, Issue 5, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-05-19
DOI
10.1093/molbev/msac109
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A large transposable element mediates metal resistance in the fungus Paecilomyces variotii
- (2022) Andrew S. Urquhart et al. CURRENT BIOLOGY
- The Enterprise, a massive transposon carrying Spok meiotic drive genes
- (2021) Aaron A. Vogan et al. GENOME RESEARCH
- The identification of a transposon affecting the asexual reproduction of the wheat pathogen Zymoseptoria tritici
- (2021) Chen Wang et al. MOLECULAR PLANT PATHOLOGY
- Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen
- (2021) Thomas Badet et al. Nature Communications
- Ago1 Affects the Virulence of the Fungal Plant Pathogen Zymoseptoria tritici
- (2021) Michael Habig et al. Genes
- Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis
- (2021) Alexandra Dallaire et al. GENOME RESEARCH
- Why do plasmids manipulate the expression of bacterial phenotypes?
- (2021) Kathryn Billane et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
- (2020) Oleksandr M. Maistrenko et al. ISME Journal
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accessory Chromosomes in Fusarium oxysporum
- (2020) He Yang et al. PHYTOPATHOLOGY
- ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
- (2020) Jacob L. Steenwyk et al. PLOS BIOLOGY
- Genomic plasticity associated with antimicrobial resistance inVibrio cholerae
- (2019) Jyoti Verma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas
- (2019) Ryan A. Melnyk et al. ISME Journal
- Giant Transposons in Eukaryotes: Is Bigger Better?
- (2019) Irina R Arkhipova et al. Genome Biology and Evolution
- The α-1,6-mannosyltransferase VdOCH1 plays a major role in microsclerotium formation and virulence in the soil-borne pathogen Verticillium dahliae
- (2019) Jian Zhang et al. Fungal Biology
- Combinations of Spok genes create multiple meiotic drivers in Podospora
- (2019) Aaron A Vogan et al. eLife
- Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes
- (2019) McCarthy et al. Genes
- Transposon-Mediated Horizontal Transfer of the Host-Specific Virulence Protein ToxA between Three Fungal Wheat Pathogens
- (2019) Megan C. McDonald et al. mBio
- The RIPper, a web-based tool for genome-wide quantification of Repeat-Induced Point (RIP) mutations
- (2019) Stephanie van Wyk et al. PeerJ
- Assembly, annotation, and comparison of Macrophomina phaseolina isolates from strawberry and other hosts
- (2019) Alyssa K. Burkhardt et al. BMC GENOMICS
- The Ecology and Evolution of Pangenomes
- (2019) Michael A. Brockhurst et al. CURRENT BIOLOGY
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi
- (2018) Jens Heller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MUMmer4: A fast and versatile genome alignment system
- (2018) Guillaume Marçais et al. PLoS Computational Biology
- Fusion of piggyBac-like transposons and herpesviruses occurs frequently in teleosts
- (2018) Yusuke Inoue et al. Zoological Letters
- ICEberg 2.0: an updated database of bacterial integrative and conjugative elements
- (2018) Meng Liu et al. NUCLEIC ACIDS RESEARCH
- Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots
- (2017) Eva H. Stukenbrock et al. GENETICS
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish
- (2017) Yusuke Inoue et al. Nature Communications
- Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots
- (2017) Eva H. Stukenbrock et al. GENETICS
- Analyzing isolate variability of Macrophomina phaseolina from a regional perspective
- (2016) Zachary F. Sexton et al. CROP PROTECTION
- Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
- (2016) Luigi Faino et al. GENOME RESEARCH
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health
- (2016) Angelica Marsberg et al. MOLECULAR PLANT PATHOLOGY
- Non-canonical Helitrons in Fusarium oxysporum
- (2016) Biju Vadakkemukadiyil Chellapan et al. Mobile DNA
- Integrative and Conjugative Elements (ICEs): What They Do and How They Work
- (2015) Christopher M. Johnson et al. Annual Review of Genetics
- hybridSPAdes: an algorithm for hybrid assembly of short and long reads
- (2015) Dmitry Antipov et al. BIOINFORMATICS
- Multiply to conquer: Copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat
- (2015) Tobias Würschum et al. BMC GENETICS
- Resistance to Charcoal Rot Identified in Ancestral Soybean Germplasm
- (2015) M. L. Pawlowski et al. CROP SCIENCE
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- MafFilter: a highly flexible and extensible multiple genome alignment files processor
- (2014) Julien Y Dutheil et al. BMC GENOMICS
- Functional characterization of the gene FoOCH1 encoding a putative α-1,6-mannosyltransferase in Fusarium oxysporum f. sp. cubense
- (2014) Min-Hui Li et al. FUNGAL GENETICS AND BIOLOGY
- Diversity and Variability of NOD-Like Receptors in Fungi
- (2014) Witold Dyrka et al. Genome Biology and Evolution
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Multiple recent horizontal transfers of a large genomic region in cheese making fungi
- (2014) Kevin Cheeseman et al. Nature Communications
- The evolving fungal genome
- (2014) Eva H. Stukenbrock et al. Fungal Biology Reviews
- Diverse Broad-Host-Range Plasmids from Freshwater Carry Few Accessory Genes
- (2013) Celeste J. Brown et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The MaSuRCA genome assembler
- (2013) Aleksey V. Zimin et al. BIOINFORMATICS
- Role of Ferric Reductases in Iron Acquisition and Virulence in the Fungal Pathogen Cryptococcus neoformans
- (2013) Sanjay Saikia et al. INFECTION AND IMMUNITY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Tools to kill: Genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina
- (2012) Md Islam et al. BMC GENOMICS
- A Cut-Stem Inoculation Technique to Evaluate Soybean for Resistance to Macrophomina phaseolina
- (2012) M. Twizeyimana et al. PLANT DISEASE
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Eukaryote DIRS1-like retrotransposons: an overview
- (2011) Mathieu Piednoël et al. BMC GENOMICS
- The metalloreductase FreB is involved in adaptation of Aspergillus fumigatus to iron starvation
- (2011) Michael Blatzer et al. FUNGAL GENETICS AND BIOLOGY
- Cactus: Algorithms for genome multiple sequence alignment
- (2011) B. Paten et al. GENOME RESEARCH
- Biased gene transfer in microbial evolution
- (2011) Cheryl P. Andam et al. NATURE REVIEWS MICROBIOLOGY
- Uncovering the Prevalence and Diversity of Integrating Conjugative Elements in Actinobacteria
- (2011) Mariana Gabriela Ghinet et al. PLoS One
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- genoPlotR: comparative gene and genome visualization in R
- (2010) L. Guy et al. BIOINFORMATICS
- Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
- (2010) Li-Jun Ma et al. NATURE
- Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
- (2009) R. A. Kingsley et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Actinomycete integrative and conjugative elements
- (2008) Evelien M. te Poele et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
- (2008) V. Ter-Hovhannisyan et al. GENOME RESEARCH
- Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
- (2008) Natalie D. Fedorova et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started