Synthetic bacterial community derived from a desert rhizosphere confers salt stress resilience to tomato in the presence of a soil microbiome

Root endophyte induced plant thermotolerance by constitutive chromatin modification at heat stress memory gene loci

(2021) Kirti Shekhawat et al.   EMBO REPORTS

Tailoring plant-associated microbial inoculants in agriculture: a roadmap for successful application

(2020) Maged M Saad et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative comparison between the rhizosphere effect of Arabidopsis thaliana and co-occurring plant species with a longer life history

(2020) Martinus Schneijderberg et al.   ISME Journal

Differential responses to salt stress in ion dynamics, growth and seed yield of European quinoa varieties

(2020) Viviana Jaramillo Roman et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

The WRKY transcription factor Sl WRKY8 promotes resistance to pathogen infection and mediates drought and salt stress tolerance in Solanum lycopersicum

(2019) Yong‐Feng Gao et al.   PHYSIOLOGIA PLANTARUM

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Root vacuolar Na + sequestration but not exclusion from uptake correlates with barley salt tolerance

(2019) Honghong Wu et al.   PLANT JOURNAL

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance

(2019) Ameerah Bokhari et al.   Scientific Reports

Selection and mechanism exploration for salt-tolerant genes in tomato

(2018) Xiaohong Kou et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Root cell wall solutions for crop plants in saline soils

(2018) Caitlin S. Byrt et al.   PLANT SCIENCE

A halotolerant Enterobacter sp. displaying ACC deaminase activity promotes rice seedling growth under salt stress

(2018) Anumita Sarkar et al.   RESEARCH IN MICROBIOLOGY

Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2‐keto‐4‐methylthiobutyric acid production

(2018) Axel de Zélicourt et al.   PLoS Genetics

Mining the Genome of Streptomyces leeuwenhoekii: Two New Type I Baeyer–Villiger Monooxygenases From Atacama Desert

(2018) Alejandro Gran-Scheuch et al.   Frontiers in Microbiology

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Desert plant bacteria reveal host influence and beneficial plant growth properties

(2018) Abdul Aziz Eida et al.   PLoS One

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Bacillus aryabhattai SRB02 tolerates oxidative and nitrosative stress and promotes the growth of soybean by modulating the production of phytohormones

(2017) Yeon-Gyeong Park et al.   PLoS One

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Coordination between Bradyrhizobium and Pseudomonas alleviates salt stress in soybean through altering root system architecture

(2017) Dilfuza Egamberdieva et al.   Journal of Plant Interactions

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

(2017) Cristina Andrés-Barrao et al.   Frontiers in Microbiology

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

High-Throughput Non-destructive Phenotyping of Traits that Contribute to Salinity Tolerance in Arabidopsis thaliana

(2016) Mariam Awlia et al.   Frontiers in Plant Science

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Next generation of microbial inoculants for agriculture and bioremediation

(2016) Antonino Baez-Rogelio et al.   Microbial Biotechnology

The Multifarious PGPR Serratia marcescens CDP-13 Augments Induced Systemic Resistance and Enhanced Salinity Tolerance of Wheat (Triticum aestivum L.)

(2016) Rajnish Prakash Singh et al.   PLoS One

Genetic Diversity and Association Characters of Bacteria Isolated from Arbuscular Mycorrhizal Fungal Spore Walls

(2016) Gopal Selvakumar et al.   PLoS One

Plant growth-promoting bacteria as inoculants in agricultural soils

(2015) Rocheli de Souza et al.   GENETICS AND MOLECULAR BIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Cellulose synthesis genesCESA6andCSI1are important for salt stress tolerance inArabidopsis

(2015) Shuang-Shuang Zhang et al.   Journal of Integrative Plant Biology

Root and bacterial secretions regulate the interaction between plants and PGPR leading to distinct plant growth promotion effects

(2015) Dongmei Zhou et al.   PLANT AND SOIL

Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes

(2014) Timothy J. Flowers et al.   ANNALS OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

The Salt Overly Sensitive (SOS) Pathway: Established and Emerging Roles

(2013) Hongtao Ji et al.   Molecular Plant

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)

(2013) Yoav Bashan et al.   PLANT AND SOIL

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Overexpression of SlSOS2 (SlCIPK24) confers salt tolerance to transgenic tomato

(2012) RAÚL HUERTAS et al.   PLANT CELL AND ENVIRONMENT

Inducing salt tolerance in mung bean through coinoculation with rhizobia and plant-growth-promoting rhizobacteria containing 1-aminocyclopropane-1-carboxylate deaminase

(2011) Maqshoof Ahmad et al.   CANADIAN JOURNAL OF MICROBIOLOGY

NADPH oxidase AtrbohD and AtrbohF function in ROS-dependent regulation of Na+/K+ homeostasis in Arabidopsis under salt stress

(2011) Liya Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Improved Salinity Tolerance of Rice Through Cell Type-Specific Expression of AtHKT1;1

(2010) Darren Plett et al.   PLoS One

Phylogeny of the tribe Indigofereae (Leguminosae-Papilionoideae): Geographically structured more in succulent-rich and temperate settings than in grass-rich environments

(2009) Brian D. Schrire et al.   AMERICAN JOURNAL OF BOTANY

Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress

(2009) Trond Løvdal et al.   ANALYTICAL BIOCHEMISTRY

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

The plasma membrane Na+/H+antiporter SOS1 is essential for salt tolerance in tomato and affects the partitioning of Na+between plant organs

(2009) RAQUEL OLÍAS et al.   PLANT CELL AND ENVIRONMENT

Soil Bacteria Confer Plant Salt Tolerance by Tissue-Specific Regulation of the Sodium TransporterHKT1

(2008) Huiming Zhang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE