Dynamics of sex-biased gene expression during development in the stick insect Timema californicum

Convergent consequences of parthenogenesis on stick insect genomes

(2022) Kamil S. Jaron et al.   Science Advances

Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis

(2020) Alfredo Rago et al.   PLoS Genetics

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

(2019) Iakov I Davydov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hemimetabolous insects elucidate the origin of sexual development via alternative splicing

(2019) Judith Wexler et al.   eLife

Sex-biased gene expression is repeatedly masculinized in asexual females

(2019) Darren J. Parker et al.   Nature Communications

Evolution of Sex-Biased Gene Expression and Dosage Compensation in the Eye and Brain of Heliconius Butterflies

(2018) Ana Catalán et al.   MOLECULAR BIOLOGY AND EVOLUTION

Developmental Constraints on Genome Evolution in Four Bilaterian Model Species

(2018) Jialin Liu et al.   Genome Biology and Evolution

Identification and functional analysis of the doublesex gene in the sexual development of a hemimetabolous insect, the brown planthopper

(2018) Ji-Chong Zhuo et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The transcriptional architecture of phenotypic dimorphism

(2017) Judith E. Mank   Nature Ecology & Evolution

Inferring regulatory change from gene expression: the confounding effects of tissue scaling

(2016) Stephen H. Montgomery et al.   MOLECULAR ECOLOGY

FlyBase at 25: looking to the future

(2016) L. Sian Gramates et al.   NUCLEIC ACIDS RESEARCH

Sex Biased Gene Expression Profiling of Human Brains at Major Developmental Stages

(2016) Lei Shi et al.   Scientific Reports

Sexually dimorphic gene expression emerges with embryonic genome activation and is dynamic throughout development

(2015) Robert Lowe et al.   BMC GENOMICS

The X Chromosome of Hemipteran Insects: Conservation, Dosage Compensation and Sex-Biased Expression

(2015) Arka Pal et al.   Genome Biology and Evolution

Efficient Test and Visualization of Multi-Set Intersections

(2015) Minghui Wang et al.   Scientific Reports

Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos

(2015) Mathilde Paris et al.   PLoS Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Ontogeny and Evolution of Sex-Biased Gene Expression in Drosophila melanogaster

(2014) Jennifer C. Perry et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sex-Biased Gene Expression and Sexual Conflict throughout Development: Table 1.

(2014) Fiona C. Ingleby et al.   Cold Spring Harbor Perspectives in Biology

Neutral and selection-driven decay of sexual traits in asexual stick insects

(2013) T. Schwander et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic Distribution and Evolutionary Dynamics of the Sex Determination Genes doublesex and transformer in Insects

(2013) E. Geuverink et al.   Sexual Development

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution

(2012) Sonja Grath et al.   Genome Biology and Evolution

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Function, Developmental Genetics, and Fitness Consequences of a Sexually Antagonistic Trait

(2012) A. Khila et al.   SCIENCE

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads

(2011) Matthew C Hale et al.   BMC GENOMICS

Global expression profile of silkworm genes from larval to pupal stages: Toward a comprehensive understanding of sexual differences

(2011) Min Zhao et al.   Insect Science

Transcription Regulation of Sex-Biased Genes during Ontogeny in the Malaria Vector Anopheles gambiae

(2011) Kalle Magnusson et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Insect sex determination: it all evolves around transformer

(2010) Eveline C Verhulst et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Ontogenetic Complexity of Sexual Dimorphism and Sex-Specific Selection

(2010) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits

(2010) Shuang Chen et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Are sex-biased genes more dispensable?

(2009) J. E. Mank et al.   Biology Letters

MULTIPLE DIRECT TRANSITIONS FROM SEXUAL REPRODUCTION TO APOMICTIC PARTHENOGENESIS INTIMEMASTICK INSECTS

(2008) Tanja Schwander et al.   EVOLUTION

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources