FlyBase at 25: looking to the future

FlyBase portals to human disease research usingDrosophilamodels

(2016) Gillian H. Millburn et al.   Disease Models & Mechanisms

Mouse Genome Database: From sequence to phenotypes and disease models

(2015) Janan T. Eppig et al.   GENESIS

The Release 6 reference sequence of theDrosophila melanogastergenome

(2015) Roger A. Hoskins et al.   GENOME RESEARCH

FlyBase: establishing a Gene Group resource forDrosophila melanogaster

(2015) Helen Attrill et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Gene Model Annotations for Drosophila melanogaster : The Rule-Benders

(2015) Madeline A. Crosby et al.   G3-Genes Genomes Genetics

Gene Model Annotations for Drosophila melanogaster : Impact of High-Throughput Data

(2015) Beverley B. Matthews et al.   G3-Genes Genomes Genetics

A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila

(2015) Sonal Nagarkar-Jaiswal et al.   eLife

A genetic toolkit for tagging intronic MiMIC containing genes

(2015) Sonal Nagarkar-Jaiswal et al.   eLife

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

(2014) L. Ciglar et al.   DEVELOPMENT

A conserved role for Snail as a potentiator of active transcription

(2014) M. Rembold et al.   GENES & DEVELOPMENT

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

(2014) J. Wen et al.   GENOME RESEARCH

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

(2014) Evgeny Z. Kvon et al.   NATURE

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

(2014) Evgenia V. Kriventseva et al.   NUCLEIC ACIDS RESEARCH

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

(2014) Warren A. Kibbe et al.   NUCLEIC ACIDS RESEARCH

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

(2014) Joanna S. Amberger et al.   NUCLEIC ACIDS RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

The Drosophila phenotype ontology

(2013) David Osumi-Sutherland et al.   Journal of Biomedical Semantics

The Drosophila anatomy ontology

(2013) Marta Costa et al.   Journal of Biomedical Semantics

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

(2012) Guillaume Junion et al.   CELL

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

(2012) P. Batut et al.   GENOME RESEARCH

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

(2012) Stefan Bonn et al.   NATURE GENETICS

FlyBase: improvements to the bibliography

(2012) Steven J. Marygold et al.   NUCLEIC ACIDS RESEARCH

Directly e-mailing authors of newly published papers encourages community curation

(2012) Stephanie M. Bunt et al.   Database-The Journal of Biological Databases and Curation

An integrative approach to ortholog prediction for disease-focused and other functional studies

(2011) Yanhui Hu et al.   BMC BIOINFORMATICS

MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes

(2011) Koen J T Venken et al.   NATURE METHODS

Drosophila P elements preferentially transpose to replication origins

(2011) A. C. Spradling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of promoter architecture in Drosophila melanogaster

(2010) R. A. Hoskins et al.   GENOME RESEARCH

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

(2010) E. Berezikov et al.   GENOME RESEARCH

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Combinatorial binding predicts spatio-temporal cis-regulatory activity

(2009) Robert P. Zinzen et al.   NATURE

Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster

(2009) Koen J T Venken et al.   NATURE METHODS

MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database

(2008) B. Ahsan et al.   NUCLEIC ACIDS RESEARCH