The Ontogeny and Evolution of Sex-Biased Gene Expression in Drosophila melanogaster

Sex-biased gene expression in the brown alga Fucus vesiculosus

(2013) Maria João F Martins et al.   BMC GENOMICS

The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome

(2013) Hooman K. Moghadam et al.   Molecular Ecology Resources

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Population and sex differences in Drosophila melanogaster brain gene expression

(2012) Ana Catalán et al.   BMC GENOMICS

Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly

(2012) Peter W. Harrison et al.   Genome Biology and Evolution

Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution

(2012) Sonja Grath et al.   Genome Biology and Evolution

Little Evidence for Demasculinization of the Drosophila X Chromosome among Genes Expressed in the Male Germline

(2012) Colin D. Meiklejohn et al.   Genome Biology and Evolution

Disentangling the relationship between sex-biased gene expression and X-linkage

(2012) R. P. Meisel et al.   GENOME RESEARCH

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

An Excess of Gene Expression Divergence on the X Chromosome in Drosophila Embryos: Implications for the Faster-X Hypothesis

(2012) Melek A. Kayserili et al.   PLoS Genetics

Faster-X Evolution of Gene Expression in Drosophila

(2012) Richard P. Meisel et al.   PLoS Genetics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Lack of global meiotic sex chromosome inactivation, and paucity of tissue-specific gene expression on the Drosophila X chromosome

(2011) Lyudmila M Mikhaylova et al.   BMC BIOLOGY

Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation

(2011) Valeria P Carreira et al.   BMC DEVELOPMENTAL BIOLOGY

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

(2011) Peter L Chang et al.   BMC GENOMICS

Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads

(2011) Matthew C Hale et al.   BMC GENOMICS

Global expression profile of silkworm genes from larval to pupal stages: Toward a comprehensive understanding of sexual differences

(2011) Min Zhao et al.   Insect Science

Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution

(2011) R. P. Meisel   MOLECULAR BIOLOGY AND EVOLUTION

FlyBase 101 - the basics of navigating FlyBase

(2011) P. McQuilton et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The evolution of gene expression and the transcriptome–phenotype relationship

(2011) Peter W. Harrison et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Sex Chromosome-Specific Regulation in the Drosophila Male Germline But Little Evidence for Chromosomal Dosage Compensation or Meiotic Inactivation

(2011) Colin D. Meiklejohn et al.   PLOS BIOLOGY

Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq

(2010) Qiang Gan et al.   CELL RESEARCH

CONDITION-DEPENDENCE OF THE SEXUALLY DIMORPHIC TRANSCRIPTOME IN DROSOPHILA MELANOGASTER

(2010) Minyoung J. Wyman et al.   EVOLUTION

Demystifying phenotypes: The comparative genomics of evo-devo

(2010) Carlo G. Artieri et al.   FLY

The Drosophila melanogaster transcriptome by paired-end RNA sequencing

(2010) B. Daines et al.   GENOME RESEARCH

The Drosophila melanogaster sperm proteome-II (DmSP-II)

(2010) Elizabeth R. Wasbrough et al.   Journal of Proteomics

Estimation of the Neutrality Index

(2010) N. Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ontogenetic Complexity of Sexual Dimorphism and Sex-Specific Selection

(2010) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

The Sexually Antagonistic Genes of Drosophila melanogaster

(2010) Paolo Innocenti et al.   PLOS BIOLOGY

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila

(2009) Carlo G Artieri et al.   BMC BIOLOGY

Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis

(2009) Matthew S Lebo et al.   BMC GENOMICS

A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: Evidence for masculinization of the transcriptome

(2009) Clayton M Small et al.   BMC GENOMICS

The Deficit of Male-Biased Genes on the D. melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?

(2009) Beatriz Vicoso et al.   JOURNAL OF MOLECULAR EVOLUTION

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Sex Chromosomes and the Evolution of Sexual Dimorphism: Lessons from the Genome

(2008) Judith E. Mank   AMERICAN NATURALIST

Analysis of the Drosophila melanogaster Testes Transcriptome Reveals Coordinate Regulation of Paralogous Genes

(2008) L. M. Mikhaylova et al.   GENETICS

Effects of X-Linkage and Sex-Biased Gene Expression on the Rate of Adaptive Protein Evolution in Drosophila

(2008) J. F. Baines et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of protein-coding genes in Drosophila

(2008) Amanda M. Larracuente et al.   TRENDS IN GENETICS

Pleiotropic Constraint Hampers the Resolution of Sexual Antagonism in Vertebrate Gene Expression

(2007) Judith E. Mank et al.   AMERICAN NATURALIST

Intersexual ontogenetic conflict

(2003) W. R. Rice et al.   JOURNAL OF EVOLUTIONARY BIOLOGY