Sex Bias and Maternal Contribution to Gene Expression Divergence in Drosophila Blastoderm Embryos

Faster-X Effects in Two Drosophila Lineages

(2014) Victoria Ávila et al.   Genome Biology and Evolution

Sex-Specific Embryonic Gene Expression in Species with Newly Evolved Sex Chromosomes

(2014) Susan E. Lott et al.   PLoS Genetics

Drosophila Embryogenesis Scales Uniformly across Temperature in Developmentally Diverse Species

(2014) Steven G. Kuntz et al.   PLoS Genetics

Analytic Approaches to Stochastic Gene Expression in Multicellular Systems

(2013) Alistair Nicol Boettiger   BIOPHYSICAL JOURNAL

The faster-X effect: integrating theory and data

(2013) Richard P. Meisel et al.   TRENDS IN GENETICS

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

(2013) Mathilde Paris et al.   PLoS Genetics

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Sex-Biased Transcriptome Evolution in Drosophila

(2012) Raquel Assis et al.   Genome Biology and Evolution

Disentangling the relationship between sex-biased gene expression and X-linkage

(2012) R. P. Meisel et al.   GENOME RESEARCH

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay

(2012) Filippo Cacace et al.   PLoS Computational Biology

An Excess of Gene Expression Divergence on the X Chromosome in Drosophila Embryos: Implications for the Faster-X Hypothesis

(2012) Melek A. Kayserili et al.   PLoS Genetics

Faster-X Evolution of Gene Expression in Drosophila

(2012) Richard P. Meisel et al.   PLoS Genetics

Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution

(2011) R. P. Meisel   MOLECULAR BIOLOGY AND EVOLUTION

Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

(2011) Susan E. Lott et al.   PLOS BIOLOGY

Coupled Evolution of Transcription and mRNA Degradation

(2011) Mally Dori-Bachash et al.   PLOS BIOLOGY

Evidence of Activity-Specific, Radial Organization of Mitotic Chromosomes in Drosophila

(2011) Yuri G. Strukov et al.   PLOS BIOLOGY

Evolution of Sex Chromosomes in Insects

(2010) Vera B. Kaiser et al.   Annual Review of Genetics

Major role for mRNA stability in shaping the kinetics of gene induction

(2010) Ran Elkon et al.   BMC GENOMICS

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

Egg size, embryonic development time and ovoviviparity in Drosophila species

(2008) T. A. MARKOW et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Sex chromosomes and speciation in Drosophila

(2008) Daven C. Presgraves   TRENDS IN GENETICS