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Title
Spatial omics: Navigating to the golden era of cancer research
Authors
Keywords
-
Journal
Clinical and Translational Medicine
Volume 12, Issue 1, Pages -
Publisher
Wiley
Online
2022-01-18
DOI
10.1002/ctm2.696
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- (2021) Giovanni Pasquini et al. Computational and Structural Biotechnology Journal
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- (2021) Anjali Rao et al. NATURE
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- (2021) Sophia K. Longo et al. NATURE REVIEWS GENETICS
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- (2021) Yingcheng Wu et al. Cancer Discovery
- Cell segmentation in imaging-based spatial transcriptomics
- (2021) Viktor Petukhov et al. NATURE BIOTECHNOLOGY
- Cancer Genome Evolutionary Trajectories in Metastasis
- (2020) Nicolai J. Birkbak et al. CANCER CELL
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- (2020) Shiquan Sun et al. NATURE METHODS
- CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
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- (2020) Joseph Bergenstråhle et al. BMC BIOINFORMATICS
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- (2020) Bo Zheng et al. Advanced Science
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- (2020) Junbin Qian et al. CELL RESEARCH
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- (2020) Yuanyuan Zhang et al. Cellular & Molecular Immunology
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- (2020) Robert A. Gatenby et al. Nature Reviews Clinical Oncology
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- (2020) Baolin Liu et al. Nature Communications
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- (2016) Mario Kompauer et al. NATURE METHODS
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- (2016) Sheel Shah et al. NEURON
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- (2008) J. M. Wiseman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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