Inferring spatial and signaling relationships between cells from single cell transcriptomic data
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Title
Inferring spatial and signaling relationships between cells from single cell transcriptomic data
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-04-29
DOI
10.1038/s41467-020-15968-5
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- (2018) Daniel A. Skelly et al. Cell Reports
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- (2018) et al. Genes
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- (2018) Bosiljka Tasic et al. NATURE
- Dimensionality reduction for visualizing single-cell data using UMAP
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- (2016) L Métivier et al. INVERSE PROBLEMS
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- A draft network of ligand–receptor-mediated multicellular signalling in human
- (2015) Jordan A. Ramilowski et al. Nature Communications
- Distribution of PCP4 protein in the forebrain of adult mice
- (2014) Maria Renelt et al. ACTA HISTOCHEMICA
- Wnt Signaling Interacts with Bmp and Edn1 to Regulate Dorsal-Ventral Patterning and Growth of the Craniofacial Skeleton
- (2014) Courtney Alexander et al. PLoS Genetics
- STUDIES IN ASTRONOMICAL TIME SERIES ANALYSIS. VI. BAYESIAN BLOCK REPRESENTATIONS
- (2013) Jeffrey D. Scargle et al. ASTROPHYSICAL JOURNAL
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