A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells
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Title
A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells
Authors
Keywords
tumor-infiltrating myeloid cells, single-cell RNA-sequencing, pan-cancer analysis, mast cells, LAMP3+ dendritic cells, tumor-associated macrophages
Journal
CELL
Volume 184, Issue 3, Pages 792-809.e23
Publisher
Elsevier BV
Online
2021-02-05
DOI
10.1016/j.cell.2021.01.010
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Note: Only part of the references are listed.- CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
- (2020) Mirjana Efremova et al. Nature Protocols
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- (2020) Gunsagar S. Gulati et al. SCIENCE
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- (2020) Barbara Maier et al. NATURE
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- (2020) Xiaoping Han et al. NATURE
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- (2020) Chenwei Li et al. Nature Communications
- Proline Metabolism in Tumor Growth and Metastatic Progression
- (2020) Cristina D'Aniello et al. Frontiers in Oncology
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- (2020) Baolin Liu et al. Nature Communications
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- (2020) Ashley Maynard et al. CELL
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- (2019) Moshe Sade-Feldman et al. CELL
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- (2019) Dvir Aran et al. NATURE IMMUNOLOGY
- Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches
- (2019) Svetoslav Chakarov et al. SCIENCE
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- (2019) Mikhail Binnewies et al. CELL
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- (2019) Rapolas Zilionis et al. IMMUNITY
- Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
- (2019) Brian Hie et al. NATURE BIOTECHNOLOGY
- ZEBs: Novel Players in Immune Cell Development and Function
- (2019) Charlotte L. Scott et al. TRENDS IN IMMUNOLOGY
- Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
- (2019) Samuel L. Wolock et al. Cell Systems
- Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma
- (2019) Junya Peng et al. CELL RESEARCH
- Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells
- (2019) Charles-Antoine Dutertre et al. IMMUNITY
- Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity
- (2019) Chrysothemis C. Brown et al. CELL
- Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma
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- (2019) Kyohei Nakamura et al. Cellular & Molecular Immunology
- NicheNet: modeling intercellular communication by linking ligands to target genes
- (2019) Robin Browaeys et al. NATURE METHODS
- CXCL9, CXCL10, CXCL11/CXCR3 axis for immune activation – A target for novel cancer therapy
- (2018) Ryuma Tokunaga et al. CANCER TREATMENT REVIEWS
- An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
- (2018) Jianfang Liu et al. CELL
- Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
- (2018) Elham Azizi et al. CELL
- Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing
- (2018) Xinyi Guo et al. NATURE MEDICINE
- Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
- (2018) Matthew D. Young et al. SCIENCE
- RARα supports the development of Langerhans cells and langerin-expressing conventional dendritic cells
- (2018) Seika Hashimoto-Hill et al. Nature Communications
- Lineage tracking reveals dynamic relationships of T cells in colorectal cancer
- (2018) Lei Zhang et al. NATURE
- Identification of CMTM6 and CMTM4 as PD-L1 protein regulators
- (2017) Riccardo Mezzadra et al. NATURE
- CMTM6 maintains the expression of PD-L1 and regulates anti-tumour immunity
- (2017) Marian L. Burr et al. NATURE
- Toil enables reproducible, open source, big biomedical data analyses
- (2017) John Vivian et al. NATURE BIOTECHNOLOGY
- SCENIC: single-cell regulatory network inference and clustering
- (2017) Sara Aibar et al. NATURE METHODS
- Single-cell mRNA quantification and differential analysis with Census
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
- (2017) Alexandra-Chloé Villani et al. SCIENCE
- Crosstalk between Regulatory T Cells and Tumor-Associated Dendritic Cells Negates Anti-tumor Immunity in Pancreatic Cancer
- (2017) Jung-Eun Jang et al. Cell Reports
- TGF-β1-induced transcription factor networks in Langerhans cell development and maintenance
- (2016) X. Zhang et al. ALLERGY
- Mast cells as therapeutic target in cancer
- (2016) Domenico Ribatti EUROPEAN JOURNAL OF PHARMACOLOGY
- Mast cells and basophils in inflammatory and tumor angiogenesis and lymphangiogenesis
- (2016) Gianni Marone et al. EUROPEAN JOURNAL OF PHARMACOLOGY
- BTLA + Dendritic Cells: The Regulatory T Cell Force Awakens
- (2016) Thomas Simon et al. IMMUNITY
- Expansion and Activation of CD103 + Dendritic Cell Progenitors at the Tumor Site Enhances Tumor Responses to Therapeutic PD-L1 and BRAF Inhibition
- (2016) Hélène Salmon et al. IMMUNITY
- Tumour-specific proline vulnerability uncovered by differential ribosome codon reading
- (2016) Fabricio Loayza-Puch et al. NATURE
- New insights into the multidimensional concept of macrophage ontogeny, activation and function
- (2016) Florent Ginhoux et al. NATURE IMMUNOLOGY
- The Receptor Tyrosine Kinase AXL in Cancer Progression
- (2016) Erinn Rankin et al. Cancers
- Mast-Cell-Derived TNF Amplifies CD8+ Dendritic Cell Functionality and CD8+ T Cell Priming
- (2015) Jan Dudeck et al. Cell Reports
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment
- (2014) Yonit Lavin et al. CELL
- Environment Drives Selection and Function of Enhancers Controlling Tissue-Specific Macrophage Identities
- (2014) David Gosselin et al. CELL
- Human macrophage polarization in vitro: Maturation and activation methods compared
- (2014) Daphne Y.S. Vogel et al. IMMUNOBIOLOGY
- Macrophage heterogeneity in tissues: phenotypic diversity and functions
- (2014) Siamon Gordon et al. IMMUNOLOGICAL REVIEWS
- Dendritic Cells: Master Regulators of the Immune Response
- (2013) I. Mellman Cancer Immunology Research
- Mast cells as novel mediators of reproductive processes
- (2013) Katja Woidacki et al. Frontiers in Immunology
- Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
- (2012) Christopher T. Saunders et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Effectors and memories: Bcl-6 and Blimp-1 in T and B lymphocyte differentiation
- (2010) Shane Crotty et al. NATURE IMMUNOLOGY
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- Muc4/MUC4 functions and regulation in cancer
- (2009) Kermit L Carraway et al. Future Oncology
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