Overview of Metabolomic Analysis and the Integration with Multi-Omics for Economic Traits in Cattle
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Overview of Metabolomic Analysis and the Integration with Multi-Omics for Economic Traits in Cattle
Authors
Keywords
-
Journal
Metabolites
Volume 11, Issue 11, Pages 753
Publisher
MDPI AG
Online
2021-11-02
DOI
10.3390/metabo11110753
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Comparative genomics and metabolomics analysis of Riemerella anatipestifer strain CH-1 and CH-2
- (2021) Jibin Liu et al. Scientific Reports
- Identification of the relationship between the gut microbiome and feed efficiency in a commercial pig cohort
- (2021) Hui Jiang et al. JOURNAL OF ANIMAL SCIENCE
- Rumen fluid metabolomics of beef steers differing in feed efficiency
- (2020) Brooke A. Clemmons et al. Metabolomics
- Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth
- (2020) Hao Tong et al. Nature Communications
- Metabolite Genome-Wide Association Study (mGWAS) and Gene-Metabolite Interaction Network Analysis Reveal Potential Biomarkers for Feed Efficiency in Pigs
- (2020) Xiao Wang et al. Metabolites
- Can metabolic prediction be an alternative to genomic prediction in barley?
- (2020) Mathias Ruben Gemmer et al. PLoS One
- Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology
- (2020) Ili Nadhirah Jamil et al. Frontiers in Plant Science
- Machine Learning Applications for Mass Spectrometry-Based Metabolomics
- (2020) Ulf W. Liebal et al. Metabolites
- hcapca: Automated Hierarchical Clustering and Principal Component Analysis of Large Metabolomic Datasets in R
- (2020) Shaurya Chanana et al. Metabolites
- Integrative Analysis of Metabolomic and Transcriptomic Profiles Uncovers Biological Pathways of Feed Efficiency in Pigs
- (2020) Priyanka Banerjee et al. Metabolites
- MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data
- (2020) Joanna C. Wolthuis et al. Metabolomics
- Genomic Heritability and Genome-Wide Association Studies of Plasma Metabolites in Crossbred Beef Cattle
- (2020) Jiyuan Li et al. Frontiers in Genetics
- Muscle and liver metabolomic signatures associated with residual feed intake in Nellore cattle
- (2020) N.R.B. Cônsolo et al. ANIMAL FEED SCIENCE AND TECHNOLOGY
- Identification of a metabolomic signature associated with feed efficiency in beef cattle
- (2019) Francisco José Novais et al. BMC GENOMICS
- Invited review: β-hydroxybutyrate concentration in blood and milk and its associations with cow performance
- (2019) A. Benedet et al. Animal
- Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
- (2019) Himel Mallick et al. Nature Communications
- Computational Methods for the Discovery of Metabolic Markers of Complex Traits
- (2019) Michael Lee et al. Metabolites
- Metabolomics Analyses in High-Low Feed Efficient Dairy Cows Reveal Novel Biochemical Mechanisms and Predictive Biomarkers
- (2019) Xiao Wang et al. Metabolites
- Metabolomics meets machine learning: Longitudinal metabolite profiling in serum of normal versus overconditioned cows and pathway analysis
- (2019) Morteza H. Ghaffari et al. JOURNAL OF DAIRY SCIENCE
- AMON: annotation of metabolite origins via networks to integrate microbiome and metabolome data
- (2019) M. Shaffer et al. BMC BIOINFORMATICS
- VOCCluster: Untargeted Metabolomics Feature Clustering Approach for Clinical Breath Gas Chromatography/Mass Spectrometry Data
- (2019) Yaser Alkhalifah et al. ANALYTICAL CHEMISTRY
- PSXI-12 Comparative metabolomics of blood plasma from Hanwoo beef cattle at different ages and fed diets with different nutritional levels, by using liquid chromatography-mass spectrometry
- (2019) Jin Young Jeong et al. JOURNAL OF ANIMAL SCIENCE
- Integration of lipidomics and metabolomics for in-depth understanding of cellular mechanism and disease progression
- (2019) Raoxu Wang et al. Journal of Genetics and Genomics
- Impact of Bovine Diet on Metabolomic Profile of Skim Milk and Whey Protein Ingredients
- (2019) Jonathan B. Magan et al. Metabolites
- A multi-omics analysis of the regulatory changes induced by miR-223 in a monocyte/macrophage cell line
- (2018) Eléonore M'baya-Moutoula et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- MetaboDiff: an R package for differential metabolomic analysis
- (2018) Andreas Mock et al. BIOINFORMATICS
- MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
- (2018) Jasmine Chong et al. BIOINFORMATICS
- IntLIM: integration using linear models of metabolomics and gene expression data
- (2018) Jalal K. Siddiqui et al. BMC BIOINFORMATICS
- Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating period
- (2018) K. DiGiacomo et al. JOURNAL OF DAIRY SCIENCE
- Serum metabolome profiling revealed potential biomarkers for milk protein yield in dairy cows
- (2018) Xuehui Wu et al. Journal of Proteomics
- NormalizeMets: assessing, selecting and implementing statistical methods for normalizing metabolomics data
- (2018) Alysha M. De Livera et al. Metabolomics
- MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
- (2018) Jasmine Chong et al. NUCLEIC ACIDS RESEARCH
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- MetaboClust: Using interactive time-series cluster analysis to relate metabolomic data with perturbed pathways
- (2018) Martin J. Rusilowicz et al. PLoS One
- Prediction of whole-genome risk for selection and management of hyperketonemia in Holstein dairy cattle
- (2017) K.A. Weigel et al. JOURNAL OF ANIMAL BREEDING AND GENETICS
- Systems biology guided by XCMS Online metabolomics
- (2017) Tao Huan et al. NATURE METHODS
- Interplay between epigenetics and metabolism in oncogenesis: mechanisms and therapeutic approaches
- (2017) C C Wong et al. ONCOGENE
- Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration
- (2017) Kwanjeera Wanichthanarak et al. PLoS One
- Metabolomic and proteomic investigations of impacts of titanium dioxide nanoparticles on Escherichia coli
- (2017) Mariane Planchon et al. PLoS One
- Succinate, an intermediate in metabolism, signal transduction, ROS, hypoxia, and tumorigenesis
- (2016) Laszlo Tretter et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- Alpha-Ketoglutarate: Physiological Functions and Applications
- (2016) Nan Wu et al. Biomolecules & Therapeutics
- Integration of metabolomics, lipidomics and clinical data using a machine learning method
- (2016) Animesh Acharjee et al. BMC BIOINFORMATICS
- Deep learning in bioinformatics
- (2016) Seonwoo Min et al. BRIEFINGS IN BIOINFORMATICS
- The effect of subclinical ketosis on activity at estrus and reproductive performance in dairy cattle
- (2016) Andrew J. Rutherford et al. JOURNAL OF DAIRY SCIENCE
- A metabolomics approach to characterize phenotypes of metabolic transition from late pregnancy to early lactation in dairy cows
- (2016) Ákos Kenéz et al. Metabolomics
- Evaluation of the utility of gene expression and metabolic information for genomic prediction in maize
- (2016) Zhigang Guo et al. THEORETICAL AND APPLIED GENETICS
- Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
- (2016) Cecilia Noecker et al. mSystems
- Risk factors for subclinical and clinical ketosis and association with production parameters in dairy cows in the Netherlands
- (2015) T. Vanholder et al. JOURNAL OF DAIRY SCIENCE
- Metabolomic analysis reveals functional overlapping of three signal transduction proteins in regulating ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
- (2015) Ye Zhu et al. Molecular BioSystems
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding
- (2015) Yusheng Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regularization Paths for Generalized Linear Models via Coordinate Descent
- (2015) Jerome Friedman et al. Journal of Statistical Software
- Invited review: Improving feed efficiency in dairy production: challenges and possibilities
- (2014) E. E. Connor Animal
- Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs
- (2014) Duy Do et al. BMC GENETICS
- Metabolomic biomarkers correlating with hepatic lipidosis in dairy cows
- (2014) Sandro Imhasly et al. BMC Veterinary Research
- Letter to the Editor: On the term 'interaction' and related phrases in the literature on Random Forests
- (2014) A.-L. Boulesteix et al. BRIEFINGS IN BIOINFORMATICS
- Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities
- (2014) Haja N. Kadarmideen Livestock Science
- Plasma metabolites associated with residual feed intake and other productivity performance traits in beef cattle
- (2014) B.K. Karisa et al. Livestock Science
- Metabolomic Derangements Are Associated with Mortality in Critically Ill Adult Patients
- (2014) Angela J. Rogers et al. PLoS One
- Double-sieving-defective aminoacyl-tRNA synthetase causes protein mistranslation and affects cellular physiology and development
- (2014) Jiongming Lu et al. Nature Communications
- A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle
- (2013) Philipp Widmann et al. BMC GENOMICS
- Epigenetics meets metabolomics: an epigenome-wide association study with blood serum metabolic traits
- (2013) Ann-Kristin Petersen et al. HUMAN MOLECULAR GENETICS
- Investigating associations between milk metabolite profiles and milk traits of Holstein cows
- (2013) N. Melzer et al. JOURNAL OF DAIRY SCIENCE
- Changes in Milk Proteome and Metabolome Associated with Dry Period Length, Energy Balance, and Lactation Stage in Postparturient Dairy Cows
- (2013) Jing Lu et al. JOURNAL OF PROTEOME RESEARCH
- INMEX—a web-based tool for integrative meta-analysis of expression data
- (2013) Jianguo Xia et al. NUCLEIC ACIDS RESEARCH
- Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
- (2012) W. G. Touw et al. BRIEFINGS IN BIOINFORMATICS
- The association of serum metabolites in the transition period with milk production and early-lactation reproductive performance
- (2012) N. Chapinal et al. JOURNAL OF DAIRY SCIENCE
- A metabolomics approach to uncover the effects of grain diets on rumen health in dairy cows
- (2012) F. Saleem et al. JOURNAL OF DAIRY SCIENCE
- Epidemiology of subclinical ketosis in early lactation dairy cattle
- (2012) J.A.A. McArt et al. JOURNAL OF DAIRY SCIENCE
- Nuclear magnetic resonance metabonomics reveals strong association between milk metabolites and somatic cell count in bovine milk
- (2012) U.K. Sundekilde et al. JOURNAL OF DAIRY SCIENCE
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis
- (2012) J. Xia et al. NUCLEIC ACIDS RESEARCH
- Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
- (2011) Atanas Kamburov et al. BIOINFORMATICS
- A field trial on the effect of propylene glycol on milk yield and resolution of ketosis in fresh cows diagnosed with subclinical ketosis
- (2011) J.A.A. McArt et al. JOURNAL OF DAIRY SCIENCE
- FaST linear mixed models for genome-wide association studies
- (2011) Christoph Lippert et al. NATURE METHODS
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- MetPA: a web-based metabolomics tool for pathway analysis and visualization
- (2010) J. Xia et al. BIOINFORMATICS
- The application of NMR to study changes in polar metabolite concentrations in beef longissimus dorsi stored for different periods post mortem
- (2010) S. F. Graham et al. Metabolomics
- Metabolomics reveals unhealthy alterations in rumen metabolism with increased proportion of cereal grain in the diet of dairy cows
- (2010) Burim N. Ametaj et al. Metabolomics
- Variance component model to account for sample structure in genome-wide association studies
- (2010) Hyun Min Kang et al. NATURE GENETICS
- Support Vector Machines for classification and regression
- (2009) Richard G. Brereton et al. ANALYST
- MetaboAnalyst: a web server for metabolomic data analysis and interpretation
- (2009) J. Xia et al. NUCLEIC ACIDS RESEARCH
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- An Important Role for the Multienzyme Aminoacyl-tRNA Synthetase Complex in Mammalian Translation and Cell Growth
- (2008) Sophia V. Kyriacou et al. MOLECULAR CELL
- Genetics Meets Metabolomics: A Genome-Wide Association Study of Metabolite Profiles in Human Serum
- (2008) Christian Gieger et al. PLoS Genetics
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More