Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Cellular determinants of metabolite concentration ranges

(2019) Anika Küken et al.   PLoS Computational Biology

Photorespiration differs among Arabidopsis thaliana ecotypes and is correlated with photosynthesis

(2018) Nicholas J Tomeo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrating –omics data into genome-scale metabolic network models: principles and challenges

(2018) Charlotte Ramon et al.   Essays in Biochemistry

Omics-based hybrid prediction in maize

(2017) Matthias Westhues et al.   THEORETICAL AND APPLIED GENETICS

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models

(2016) Max Sajitz-Hermstein et al.   BIOINFORMATICS

Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium

(2016) Pascal Schopp et al.   GENETICS

Toward integration of genomic selection with crop modelling: the development of an integrated approach to predicting rice heading dates

(2016) Akio Onogi et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium

(2016) Pascal Schopp et al.   GENETICS

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

(2015) Saleh Alseekh et al.   PLANT CELL

Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana

(2015) Robert Heise et al.   Frontiers in Plant Science

Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm

(2015) Samuel M. D. Seaver et al.   Frontiers in Plant Science

Integrating Crop Growth Models with Whole Genome Prediction through Approximate Bayesian Computation

(2015) Frank Technow et al.   PLoS One

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Relationship between starch degradation and carbon demand for maintenance and growth inArabidopsis thalianain different irradiance and temperature regimes

(2014) SARAH M. PILKINGTON et al.   PLANT CELL AND ENVIRONMENT

Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production

(2014) A. Arnold et al.   PLANT PHYSIOLOGY

Assessing the Metabolic Impact of Nitrogen Availability Using a Compartmentalized Maize Leaf Genome-Scale Model

(2014) M. Simons et al.   PLANT PHYSIOLOGY

Isotopically nonstationary13C flux analysis of changes inArabidopsis thalianaleaf metabolism due to high light acclimation

(2014) Fangfang Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Genotype × environment interaction QTL mapping in plants: lessons from Arabidopsis

(2014) Mohamed El-Soda et al.   TRENDS IN PLANT SCIENCE

The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria

(2014) Julia Mallmann et al.   eLife

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

Metabolic Fluxes in an Illuminated Arabidopsis Rosette

(2013) M. Szecowka et al.   PLANT CELL

Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions

(2013) R. Sulpice et al.   PLANT PHYSIOLOGY

Does genomic selection have a future in plant breeding?

(2013) Elisabeth Jonas et al.   TRENDS IN BIOTECHNOLOGY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

(2012) Nathan E. Lewis et al.   NATURE REVIEWS MICROBIOLOGY

Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

(2012) Sabrina Kleessen et al.   Nature Communications

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

(2010) Nathan E Lewis et al.   Molecular Systems Biology

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Starch as a major integrator in the regulation of plant growth

(2009) R. Sulpice et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation inArabidopsis

(2008) HENDRIK TSCHOEP et al.   PLANT CELL AND ENVIRONMENT