Identification of the relationship between the gut microbiome and feed efficiency in a commercial pig cohort

Gut microbiota compositional profile and serum metabolic phenotype in patients with primary open-angle glaucoma

(2020) Haijun Gong et al.   EXPERIMENTAL EYE RESEARCH

Perturbation of the gut microbiome by Prevotella spp. enhances host susceptibility to mucosal inflammation

(2020) Aida Iljazovic et al.   Mucosal Immunology

The Controversial Role of Human Gut Lachnospiraceae

(2020) Mirco Vacca et al.   Microorganisms

Metabolite Genome-Wide Association Study (mGWAS) and Gene-Metabolite Interaction Network Analysis Reveal Potential Biomarkers for Feed Efficiency in Pigs

(2020) Xiao Wang et al.   Metabolites

Impact of time and temperature on gut microbiota and SCFA composition in stool samples

(2020) Janet L. Cunningham et al.   PLoS One

Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs

(2019) Jianping Quan et al.   Frontiers in Microbiology

Host Gender and Androgen Levels Regulate Gut Bacterial Taxa in Pigs Leading to Sex-Biased Serum Metabolite Profiles

(2019) Maozhang He et al.   Frontiers in Microbiology

Improvement of Feed Efficiency in Pigs through Microbial Modulation via Fecal Microbiota Transplantation in Sows and Dietary Supplementation of Inulin in Offspring

(2019) Ursula M. McCormack et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Faecal microbiota and functional capacity associated with weaning weight in meat rabbits

(2019) Shaoming Fang et al.   Microbial Biotechnology

Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating period

(2018) K. DiGiacomo et al.   JOURNAL OF DAIRY SCIENCE

Genetic Architecture of Feeding Behavior and Feed Efficiency in a Duroc Pig Population

(2018) Rongrong Ding et al.   Frontiers in Genetics

Beneficial Effect of Intestinal Fermentation of Natural Polysaccharides

(2018) Tiehua Zhang et al.   Nutrients

Evaluating the profound effect of gut microbiome on host appetite in pigs

(2018) Hui Yang et al.   BMC MICROBIOLOGY

The immune response to Prevotella bacteria in chronic inflammatory disease

(2017) Jeppe Madura Larsen   IMMUNOLOGY

Serum metabolites associated with feed efficiency in black angus steers

(2017) Brooke A. Clemmons et al.   Metabolomics

Unraveling the Fecal Microbiota and Metagenomic Functional Capacity Associated with Feed Efficiency in Pigs

(2017) Hui Yang et al.   Frontiers in Microbiology

Metagenomic Analysis of Cecal Microbiome Identified Microbiota and Functional Capacities Associated with Feed Efficiency in Landrace Finishing Pigs

(2017) Zhen Tan et al.   Frontiers in Microbiology

Modulation of the human gut microbiota by dietary fibres occurs at the species level

(2016) Wing Sun Faith Chung et al.   BMC BIOLOGY

Supplementation of mussel peptides reduces aging phenotype, lipid deposition and oxidative stress in D-galactose-induce aging mice

(2016) Y. Zhou et al.   Journal of Nutrition Health & Aging

A batch correction method for liquid chromatography–mass spectrometry data that does not depend on quality control samples

(2016) Martin Rusilowicz et al.   Metabolomics

Normalization and integration of large-scale metabolomics data using support vector regression

(2016) Xiaotao Shen et al.   Metabolomics

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium

(2016) Qianpeng Zhang et al.   Scientific Reports

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood LipidsNovelty and Significance

(2015) Jingyuan Fu et al.   CIRCULATION RESEARCH

Sugar consumption, metabolic disease and obesity: The state of the controversy

(2015) Kimber L. Stanhope   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs

(2015) Lu Jing et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

(2014) Fionn Murtagh et al.   JOURNAL OF CLASSIFICATION

A heterozygous moth genome provides insights into herbivory and detoxification

(2013) Minsheng You et al.   NATURE GENETICS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Potential beneficial effects of butyrate in intestinal and extraintestinal diseases

(2011) Roberto Berni Canani   WORLD JOURNAL OF GASTROENTEROLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Host pathways for recognition: Establishing gastrointestinal microbiota as relevant in animal health and nutrition

(2010) B.P. Willing et al.   Livestock Science

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Substrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starch

(2010) K. P. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA