Genome-Wide Characterization of Zebrafish Endogenous Retroviruses Reveals Unexpected Diversity in Genetic Organizations and Functional Potentials

HIV-1 infection activates endogenous retroviral promoters regulating antiviral gene expression

(2020) Smitha Srinivasachar Badarinarayan et al.   NUCLEIC ACIDS RESEARCH

A map of cis-regulatory elements and 3D genome structures in zebrafish

(2020) Hongbo Yang et al.   NATURE

Expressional activation and functional roles of human endogenous retroviruses in cancers

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The Histone Methyltransferase SETDB1 Controls T Helper Cell Lineage Integrity by Repressing Endogenous Retroviruses

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Origins and evolutionary consequences of ancient endogenous retroviruses

(2019) Welkin E. Johnson   NATURE REVIEWS MICROBIOLOGY

Comprehensive Characterization of the Human Endogenous Retrovirus HERV-K(HML-6) Group: Overview of Structure, Phylogeny, and Contribution to the Human Genome

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Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression

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BTLA–HVEM Checkpoint Axis Regulates Hepatic Homeostasis and Inflammation in a ConA-Induced Hepatitis Model in Zebrafish

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The zebrafish NLRP3 inflammasome has functional roles in ASC-dependent interleukin-1β maturation and gasdermin E–mediated pyroptosis

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HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini

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The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer

(2018) Elissa D. Pastuzyn et al.   CELL

Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons

(2018) James Ashley et al.   CELL

PNMA family: Protein interaction network and cell signalling pathways implicated in cancer and apoptosis

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Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses

(2018) Xiaoyu Xu et al.   PLoS Pathogens

Nomenclature for endogenous retrovirus (ERV) loci

(2018) Robert J. Gifford et al.   Retrovirology

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

HEMO, an ancestral endogenous retroviral envelope protein shed in the blood of pregnant women and expressed in pluripotent stem cells and tumors

(2017) Odile Heidmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Control of Human Endogenous Retrovirus Expression: Focus on Regulation of Long-Terminal Repeats (LTRs)

(2017) Tara Hurst et al.   Viruses-Basel

Marine origin of retroviruses in the early Palaeozoic Era

(2017) Pakorn Aiewsakun et al.   Nature Communications

Human Endogenous Retroviral Genetic Element With Immunosuppressive Activity in Both Human Autoimmune Diseases and Experimental Arthritis

(2017) Magdalena Janina Laska et al.   Arthritis & Rheumatology

Pattern recognition receptors in zebrafish provide functional and evolutionary insight into innate immune signaling pathways

(2016) Yajuan Li et al.   Cellular & Molecular Immunology

An Intact Retroviral Gene Conserved in Spiny-Rayed Fishes for over 100 My

(2016) Jamie E. Henzy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

Classification and characterization of human endogenous retroviruses; mosaic forms are common

(2016) Laura Vargiu et al.   Retrovirology

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

(2016) Kerstin Howe et al.   Open Biology

Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?

(2016) Magali Naville et al.   Frontiers in Microbiology

A Novel Endogenous Betaretrovirus in the Common Vampire Bat (Desmodus rotundus) Suggests Multiple Independent Infection and Cross-Species Transmission Events

(2015) Marina Escalera-Zamudio et al.   JOURNAL OF VIROLOGY

Fighting Fire with Fire: Endogenous Retrovirus Envelopes as Restriction Factors

(2015) Ray Malfavon-Borja et al.   JOURNAL OF VIROLOGY

Endogenous Retroviruses in the Genomics Era

(2015) Welkin E. Johnson   Annual Review of Virology

Induction of Immunoregulatory CD271+ Cells by Metastatic Tumor Cells That Express Human Endogenous Retrovirus H

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Endogenous Retrovirus-K and Nervous System Diseases

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Zebrafish IRF1 Regulates IFN Antiviral Response through Binding to IFNϕ1 and IFNϕ3 Promoters Downstream of MyD88 Signaling

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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

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The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

(2014) Xinyi Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential

(2014) M. Ohnuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pan-vertebrate comparative genomics unmasks retrovirus macroevolution

(2014) Alexander Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wolbachia Influences the Maternal Transmission of the gypsy Endogenous Retrovirus in Drosophila melanogaster

(2014) F. Touret et al.   mBio

Genome-Wide Characterization of Endogenous Retroviruses in the Bat Myotis lucifugus Reveals Recent and Diverse Infections

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Captured retroviral envelope syncytin gene associated with the unique placental structure of higher ruminants

(2013) Guillaume Cornelis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broad-scale phylogenomics provides insights into retrovirus-host evolution

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Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Studies of endogenous retroviruses reveal a continuing evolutionary saga

(2012) Jonathan P. Stoye   NATURE REVIEWS MICROBIOLOGY

Ancestral capture of syncytin-Car1, a fusogenic endogenous retroviral envelope gene involved in placentation and conserved in Carnivora

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Unexpected Diversity and Expression of Avian Endogenous Retroviruses

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An Endogenous Foamy-like Viral Element in the Coelacanth Genome

(2012) Guan-Zhu Han et al.   PLoS Pathogens

Negative Selection by an Endogenous Retrovirus Promotes a Higher-Avidity CD4+ T Cell Response to Retroviral Infection

(2012) George R. Young et al.   PLoS Pathogens

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

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Gypsy and the Birth of the SCAN Domain

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

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Evolution of Teleost Fish Retroviruses: Characterization of New Retroviruses with Cellular Genes

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The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Origin, antiviral function and evidence for positive selection of the gammaretrovirus restriction gene Fv1 in the genus Mus

(2009) Y. Yan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Retroviruses on Host Genome Function

(2008) Patric Jern et al.   Annual Review of Genetics

Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids

(2008) Jose V Llorens et al.   BMC EVOLUTIONARY BIOLOGY

An infectious progenitor for the murine IAP retrotransposon: Emergence of an intracellular genetic parasite from an ancient retrovirus

(2008) D. Ribet et al.   GENOME RESEARCH