Genome-wide identification and functional prediction of salt- stress related long non-coding RNAs (lncRNAs) in chickpea (Cicer arietinum L.)

Identification and functional prediction of long non-coding RNAs of rice (Oryza sativa L.) at reproductive stage under salinity stress

(2021) Priyanka Jain et al.   MOLECULAR BIOLOGY REPORTS

Genome-wide transcriptome analysis and physiological variation modulates gene regulatory networks acclimating salinity tolerance in chickpea

(2021) Neeraj Kumar et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing

(2020) Masoomeh Jannesar et al.   Scientific Reports

Comparative Transcriptome Analysis Reveals New lncRNAs Responding to Salt Stress in Sweet Sorghum

(2020) Xi Sun et al.   Frontiers in Bioengineering and Biotechnology

Identification and functional prediction of salt stress-related long noncoding RNAs in grapevine roots

(2020) Zhongxin Jin et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea

(2020) Khela Ram Soren et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Overexpression of Peroxidase Gene GsPRX9 Confers Salt Tolerance in Soybean

(2019) Ting Jin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification and functional prediction of cold-related long non-coding RNA (lncRNA) in grapevine

(2019) Pengfei Wang et al.   Scientific Reports

Roles of the SPL gene family and miR156 in the salt stress responses of tamarisk (Tamarix chinensis)

(2019) Jianwen Wang et al.   BMC PLANT BIOLOGY

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

(2019) Rui Chen et al.   BMC GENOMICS

Genome-wide investigation of regulatory roles of lncRNAs in response to heat and drought stress in Brassica juncea (Indian mustard)

(2019) Garima Bhatia et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Plant salt-tolerance mechanism: A review

(2018) Wenji Liang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-wide analysis of the potato Hsp20 gene family: identification, genomic organization and expression profiles in response to heat stress

(2018) Peng Zhao et al.   BMC GENOMICS

Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress

(2018) Fenni Deng et al.   BMC PLANT BIOLOGY

Pseudomonas putida modulates the expression of miRNAs and their target genes in response to drought and salt stresses in chickpea ( Cicer arietinum L.)

(2018) Ram Jatan et al.   GENOMICS

Overexpression of a SBP-Box Gene (VpSBP16) from Chinese Wild Vitis Species in Arabidopsis Improves Salinity and Drought Stress Tolerance

(2018) Hongmin Hou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of long noncoding RNAs involved in muscle differentiation

(2018) Yeong-Hwan Lim et al.   PLoS One

Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress

(2018) Tapan Kumar Mondal et al.   Scientific Reports

Genome-wide investigation of pentatricopeptide repeat gene family in poplar and their expression analysis in response to biotic and abiotic stresses

(2018) Haitao Xing et al.   Scientific Reports

A Novel LncRNA, MuLnc1, Associated With Environmental Stress in Mulberry (Morus multicaulis)

(2018) Ying-Ping Gai et al.   Frontiers in Plant Science

Identification of Metabolites and Transcripts Involved in Salt Stress and Recovery in Peanut

(2018) Feng Cui et al.   Frontiers in Plant Science

Identification and characterization of long noncoding RNA in Paulownia tomentosa treated with methyl methane sulfonate

(2018) Zhe Wang et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments

(2018) Guanglong Chen et al.   BMC GENOMICS

Genome-wide profiling reveals extensive alterations in Pseudomonas putida-mediated miRNAs expression during drought stress in chickpea (Cicer arietinum L.)

(2018) Ram Jatan et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea

(2018) Vanika Garg et al.   PLANT BIOTECHNOLOGY JOURNAL

Evaluation of salt resistance mechanisms of grapevine hybrid rootstocks

(2018) Qing-qing Fu et al.   SCIENTIA HORTICULTURAE

Genome-wide characterization of the WRKY gene family in radish (Raphanus sativus L.) reveals its critical functions under different abiotic stresses

(2017) Bernard Kinuthia Karanja et al.   PLANT CELL REPORTS

Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance

(2017) Vinay Kumar et al.   PLANT CELL REPORTS

Potential use of the DREB/ERF, MYB, NAC and WRKY transcription factors to improve abiotic and biotic stress in transgenic plants

(2017) Ligia Erpen et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Transcription Profiles of Genes Related to Hormonal Regulations Under Salt Stress in Sweet Sorghum

(2017) Zhen Yang et al.   PLANT MOLECULAR BIOLOGY REPORTER

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance

(2017) Tao Qin et al.   PLANT PHYSIOLOGY

Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat

(2017) Shumayla et al.   Frontiers in Plant Science

MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency

(2017) Hitaishi Khandal et al.   Scientific Reports

Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

(2016) Juge Liu et al.   BMC GENOMICS

Artificial miRNA-mediated silencing of ecdysone receptor ( EcR ) affects larval development and oogenesis in Helicoverpa armigera

(2016) Sneha Yogindran et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation

(2016) Claudia Cosio et al.   NEW PHYTOLOGIST

Progress in Studying Salt Secretion from the Salt Glands in Recretohalophytes: How Do Plants Secrete Salt?

(2016) Fang Yuan et al.   Frontiers in Plant Science

Recent Advances in Utilizing Transcription Factors to Improve Plant Abiotic Stress Tolerance by Transgenic Technology

(2016) Hongyan Wang et al.   Frontiers in Plant Science

Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea

(2016) Rohini Garg et al.   Scientific Reports

Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development

(2016) Niraj Khemka et al.   Scientific Reports

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

(2015) Tian-Zuo Wang et al.   BMC PLANT BIOLOGY

Expression analysis of a MATE-type transporter gene ofArabidopsisand its orthologues in rice and chickpea under salt stress

(2015) M. S. Nimmy et al.   INDIAN JOURNAL OF GENETICS AND PLANT BREEDING

Crucial roles of the pentatricopeptide repeat protein SOAR1 in Arabidopsis response to drought, salt and cold stresses

(2015) Shang-Chuan Jiang et al.   PLANT MOLECULAR BIOLOGY

High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea

(2015) Sangeeta Srivastava et al.   PLANT SCIENCE

Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber

(2015) Zhiqiang Hao et al.   PLoS One

Where long noncoding RNAs meet DNA methylation

(2014) Fan Lai et al.   CELL RESEARCH

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

(2014) Mukesh Jain et al.   JOURNAL OF EXPERIMENTAL BOTANY

Economics of salt-induced land degradation and restoration

(2014) M. Qadir et al.   NATURAL RESOURCES FORUM

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA

(2014) Markus Wunderlich et al.   PLANT MOLECULAR BIOLOGY

Identification and Characterization of Wilt and Salt Stress-Responsive MicroRNAs in Chickpea through High-Throughput Sequencing

(2014) Deshika Kohli et al.   PLoS One

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Spatiotemporal Secretion of PEROXIDASE36 Is Required for Seed Coat Mucilage Extrusion in Arabidopsis

(2013) T. Kunieda et al.   PLANT CELL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice

(2013) Jun Zheng et al.   PLANT SCIENCE

De novo Transcriptome Sequencing Reveals a Considerable Bias in the Incidence of Simple Sequence Repeats towards the Downstream of ‘Pre-miRNAs’ of Black Pepper

(2013) Nisha Joy et al.   PLoS One

MYB transcription factor genes as regulators for plant responses: an overview

(2013) Supriya Ambawat et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

GhWRKY15, a member of the WRKY transcription factor family identified from cotton (Gossypium hirsutum L.), is involved in disease resistance and plant development

(2012) Feifei Yu et al.   BMC PLANT BIOLOGY

Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review

(2012) A. K. Jukanti et al.   BRITISH JOURNAL OF NUTRITION

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Al-inducible MATE gene is involved in external detoxification of Al in rice

(2011) Kengo Yokosho et al.   PLANT JOURNAL

Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development

(2011) R. Garg et al.   PLANT PHYSIOLOGY

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

(2011) Eun-Deok Kim et al.   TRENDS IN PLANT SCIENCE

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

Redefining MicroRNA Targets

(2009) Hervé Seitz   CURRENT BIOLOGY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology