Identification of long noncoding RNAs involved in muscle differentiation

Analysis of hypoxia-induced noncoding RNAs reveals metastasis-associated lung adenocarcinoma transcript 1 as an important regulator of vascular smooth muscle cell proliferation

(2017) Matthias Brock et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Selective expression of TSPAN2 in vascular smooth muscle is independently regulated by TGF-β1/SMAD and myocardin/serum response factor

(2017) Jinjing Zhao et al.   FASEB JOURNAL

microRNA let-7g suppresses PDGF-induced conversion of vascular smooth muscle cell into the synthetic phenotype

(2017) Tzu-Ming Wang et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Identification of the Role of miR-142-5p in Alzheimer’s Disease by Comparative Bioinformatics and Cellular Analysis

(2017) Juhyun Song et al.   Frontiers in Molecular Neuroscience

Precise mapping of the transcription start sites of human microRNAs using DROSHA knockout cells

(2016) Geon Jeong et al.   BMC GENOMICS

Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell ProliferationCLINICAL PERSPECTIVE

(2016) Margaret D. Ballantyne et al.   CIRCULATION

ADAR1-Mediated RNA Editing, A Novel Mechanism Controlling Phenotypic Modulation of Vascular Smooth Muscle CellsNovelty and Significance

(2016) Jia Fei et al.   CIRCULATION RESEARCH

Noncoding RNAs in smooth muscle cell homeostasis: implications in phenotypic switch and vascular disorders

(2016) N. Coll-Bonfill et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

The lack of the Celf2a splicing factor converts a Duchenne genotype into a Becker phenotype

(2016) J. Martone et al.   Nature Communications

Down-regulation of miR-23b induces phenotypic switching of vascular smooth muscle cellsin vitroandin vivo

(2015) Claudio Iaconetti et al.   CARDIOVASCULAR RESEARCH

MicroRNA MiR-199a-5p Regulates Smooth Muscle Cell Proliferation and Morphology by Targeting WNT2 Signaling Pathway

(2015) Ali Hashemi Gheinani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis

(2015) Samir Ounzain et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1

(2015) Liang Zhou et al.   Nature Communications

Identification and Initial Functional Characterization of a Human Vascular Cell–Enriched Long Noncoding RNA

(2014) Robert D. Bell et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Upregulated sirtuin 1 by miRNA-34a is required for smooth muscle cell differentiation from pluripotent stem cells

(2014) X Yu et al.   CELL DEATH AND DIFFERENTIATION

Neural deletion of Tgfbr2 impairs angiogenesis through an altered secretome

(2014) Nicole Hellbach et al.   HUMAN MOLECULAR GENETICS

Tgfbr2 disruption in postnatal smooth muscle impairs aortic wall homeostasis

(2014) Wei Li et al.   JOURNAL OF CLINICAL INVESTIGATION

MiRNA-146a regulates the maturation and differentiation of vascular smooth muscle cells by targeting NF-κB expression

(2013) SHAOHONG DONG et al.   Molecular Medicine Reports

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Functional Involvements of Heterogeneous Nuclear Ribonucleoprotein A1 in Smooth Muscle Differentiation from Stem Cells In Vitro and In Vivo

(2013) Yuan Huang et al.   STEM CELLS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

miRcode: a map of putative microRNA target sites in the long non-coding transcriptome

(2012) Ashwini Jeggari et al.   BIOINFORMATICS

MicroRNA-204 regulates vascular smooth muscle cell calcification in vitro and in vivo

(2012) R.-R. Cui et al.   CARDIOVASCULAR RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Micromanaging Vascular Smooth Muscle Cell Differentiation and Phenotypic Modulation

(2011) Brandi N. Davis-Dusenbery et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Functional Impact of Heterogeneous Nuclear Ribonucleoprotein A2/B1 in Smooth Muscle Differentiation from Stem Cells and Embryonic Arteriogenesis

(2011) Gang Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MicroRNA-26a is a novel regulator of vascular smooth muscle cell function

(2010) Nicholas J. Leeper et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Repairing skeletal muscle: regenerative potential of skeletal muscle stem cells

(2010) Francesco Saverio Tedesco et al.   JOURNAL OF CLINICAL INVESTIGATION

The Mammalian Sin3 Proteins Are Required for Muscle Development and Sarcomere Specification

(2010) C. van Oevelen et al.   MOLECULAR AND CELLULAR BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Complex Regulation and Function of the Inflammatory Smooth Muscle Cell Phenotype in Atherosclerosis

(2009) Anthony Wayne Orr et al.   JOURNAL OF VASCULAR RESEARCH