Towards application of CRISPR-Cas12a in the design of modern viral DNA detection tools (Review)

Versatile 3′ Functionalization of CRISPR Single Guide RNA

(2020) Cody M. Palumbo et al.   CHEMBIOCHEM

The rapidly advancing Class 2 CRISPR‐Cas technologies: A customizable toolbox for molecular manipulations

(2020) Jingyi Wang et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Cas9-Mediated Gene-Editing in the Malaria Mosquito Anopheles stephensi by ReMOT Control

(2020) Vanessa M. Macias et al.   G3-Genes Genomes Genetics

Development of a Facile Approach for Generating Chemically Modified CRISPR/Cas9 RNA

(2020) Tristan Scott et al.   Molecular Therapy-Nucleic Acids

CRISPR/Cas12a-Mediated Interfacial Cleaving of Hairpin DNA Reporter for Electrochemical Nucleic Acid Sensing

(2020) Decai Zhang et al.   ACS Sensors

Probing CRISPR-Cas12a Nuclease Activity Using Double-Stranded DNA-Templated Fluorescent Substrates

(2020) Christopher W. Smith et al.   BIOCHEMISTRY

Surpassing the detection limit and accuracy of the electrochemical DNA sensor through the application of CRISPR Cas systems

(2020) Wei Xu et al.   BIOSENSORS & BIOELECTRONICS

Novel nucleic acid detection strategies based on CRISPR‐Cas systems: from construction to application

(2020) Chu‐shu Zhu et al.   BIOTECHNOLOGY AND BIOENGINEERING

CRISPR-cas systems based molecular diagnostic tool for infectious diseases and emerging 2019 novel coronavirus (COVID-19) pneumonia

(2020) Xiaohong Xiang et al.   JOURNAL OF DRUG TARGETING

An isothermal method for sensitive detection of Mycobacterium tuberculosis complex using CRISPR/Cas12a cis- and trans-cleavage

(2020) Haipo Xu et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Detection of pseudorabies virus antibody in swine oral fluid using a serum whole-virus indirect ELISA

(2020) Ting-Yu Cheng et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

The application of a heat‐inducible CRISPR/Cas12b (C2c1) genome editing system in tetraploid cotton ( G.hirsutum ) plants

(2020) Qiongqiong Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhancing in planta gene targeting efficiencies in Arabidopsis using temperature‐tolerant CRISPR/ Lb Cas12a

(2020) Laura Merker et al.   PLANT BIOTECHNOLOGY JOURNAL

Abundance of conserved CRISPR-Cas9 target sites within the highly polymorphic genomes of Anopheles and Aedes mosquitoes

(2020) Hanno Schmidt et al.   Nature Communications

Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope

(2020) Tingting Jiang et al.   Nature Communications

Rapid and sensitive detection of COVID-19 using CRISPR/Cas12a-based detection with naked eye readout, CRISPR/Cas12a-NER

(2020) Xinjie Wang et al.   Science Bulletin

Applying CRISPR-Cas12a as a Signal Amplifier to Construct Biosensors for Non-DNA Targets in Ultralow Concentrations

(2020) Junjie Li et al.   ACS Sensors

CRISPR Mediated Biosensing Toward Understanding Cellular Biology and Point‐of‐Care Diagnosis

(2020) Yifan Dai et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Bacterial cellulose-based electrochemical sensing platform: A smart material for miniaturized biosensors

(2020) Nathalia Oezau Gomes et al.   ELECTROCHIMICA ACTA

Multiplex genome editing in Ashbya gossypii using CRISPR-Cpf1

(2020) Alberto Jiménez et al.   New Biotechnology

COVID-19 outbreak: Migration, effects on society, global environment and prevention

(2020) Indranil Chakraborty et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Application of CRISPR-Cas12a enhanced fluorescence assay coupled with nucleic acid amplification for the sensitive detection of African swine fever virus

(2020) Dagang Tao et al.   ACS Synthetic Biology

CRISPR-Based Diagnosis of Infectious and Noninfectious Diseases

(2020) Somayeh Jolany vangah et al.   BIOLOGICAL PROCEDURES ONLINE

Point-of-care CRISPR/Cas nucleic acid detection: Recent advances, challenges and opportunities

(2020) Jeanne E. van Dongen et al.   BIOSENSORS & BIOELECTRONICS

CRISPR/cas systems redefine nucleic acid detection: Principles and methods

(2020) Meng Wang et al.   BIOSENSORS & BIOELECTRONICS

An overview of applications of CRISPR-Cas technologies in biomedical engineering

(2020) Saleh Jamehdor et al.   FOLIA HISTOCHEMICA ET CYTOBIOLOGICA

Multiplex gene editing and large DNA fragment deletion by the CRISPR/Cpf1-RecE/T system in Corynebacterium glutamicum

(2020) Nannan Zhao et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Single-base genome editing in Corynebacterium glutamicum with the help of negative selection by target-mismatched CRISPR/Cpf1

(2020) Hyun Ju Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton ( G. hirsutum ) and creation of nontransgenic, gossypol‐free cotton

(2020) Bo Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhancement of trans-cleavage activity of Cas12a with engineered crRNA enables amplified nucleic acid detection

(2020) Long T. Nguyen et al.   Nature Communications

COVID-19: molecular and serological detection methods

(2020) Ahmed E. Dhamad et al.   PeerJ

Contamination-free visual detection of SARS-CoV-2 with CRISPR/Cas12a: A promising method in the point-of-care detection

(2020) Yanju Chen et al.   BIOSENSORS & BIOELECTRONICS

CRISPR adaptation from a structural perspective

(2020) Giedrius Sasnauskas et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Advances in biosensing: The CRISPR/Cas system as a new powerful tool for the detection of nucleic acids

(2020) Andrea Bonini et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Fabrication of ultrasensitive electrochemical biosensor for dengue fever viral RNA Based on CRISPR/Cpf1 reaction

(2020) Yeonju Lee et al.   SENSORS AND ACTUATORS B-CHEMICAL

Electrodeposited Gold Nanostructures for the Enhancement of Electrochromic Properties of PANI–PEDOT Film Deposited on Transparent Electrode

(2020) Anton Popov et al.   Polymers

Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a

(2019) Daan C. Swarts et al.   MOLECULAR CELL

CRISPR/Cas Systems towards Next-Generation Biosensing

(2019) Yi Li et al.   TRENDS IN BIOTECHNOLOGY

Diverse single-stranded DNA viruses associated with honey bees (Apis mellifera)

(2019) Simona Kraberger et al.   INFECTION GENETICS AND EVOLUTION

From Sanger sequencing to genome databases and beyond

(2019) Jenny Straiton et al.   BIOTECHNIQUES

Detection of unamplified target genes via CRISPR–Cas9 immobilized on a graphene field-effect transistor

(2019) Reza Hajian et al.   Nature Biomedical Engineering

Single-walled carbon nanotube based coating modified with reduced graphene oxide for the design of amperometric biosensors

(2019) Jurgis Barkauskas et al.   Materials Science & Engineering C-Materials for Biological Applications

Structure of the DNA-Bound Spacer Capture Complex of a Type II CRISPR-Cas System

(2019) Martin Wilkinson et al.   MOLECULAR CELL

CRISPR Cpf1 proteins: structure, function and implications for genome editing

(2019) Fatemeh Safari et al.   Cell and Bioscience

Enzymatic Formation of Polyaniline, Polypyrrole, and Polythiophene Nanoparticles with Embedded Glucose Oxidase

(2019) Natalija German et al.   Nanomaterials

Potential application of CRISPR-Cas12a fluorescence assay coupled with rapid nucleic acid amplification for detection of white spot syndrome virus in shrimp

(2019) Thawatchai Chaijarasphong et al.   AQUACULTURE

CRISPR–Cas in mobile genetic elements: counter-defence and beyond

(2019) Guilhem Faure et al.   NATURE REVIEWS MICROBIOLOGY

Scanning electrochemical microscopy in the development of enzymatic sensors and immunosensors

(2019) Inga Morkvenaite-Vilkonciene et al.   BIOSENSORS & BIOELECTRONICS

CRISPR-Cas12 and Cas13: the lesser known siblings of CRISPR-Cas9

(2019) Fancheng Yan et al.   CELL BIOLOGY AND TOXICOLOGY

SHERLOCK: nucleic acid detection with CRISPR nucleases

(2019) Max J. Kellner et al.   Nature Protocols

Exploring the Trans-Cleavage Activity of CRISPR-Cas12a (cpf1) for the Development of a Universal Electrochemical Biosensor

(2019) Yifan Dai et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Making the cut(s): how Cas12a cleaves target and non-target DNA

(2019) Daan C. Swarts   BIOCHEMICAL SOCIETY TRANSACTIONS

Maltose functionalized magnetic core/shell Fe3O4@Au nanoparticles for an efficient l-asparaginase immobilization

(2019) Tuba Tarhan et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Genome-wide synthetic lethal CRISPR screen identifies FIS1 as a genetic interactor of ALS-linked C9ORF72

(2019) Noori Chai et al.   BRAIN RESEARCH

Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients

(2019) Sander van Boheemen et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

(2019) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

CRISPR/Cas9-mediated gene deletion of the ompA gene in symbiotic Cedecea neteri impairs biofilm formation and reduces gut colonization of Aedes aegypti mosquitoes

(2019) Shivanand Hegde et al.   PLoS Neglected Tropical Diseases

Development of a gold nanoparticle enhanced enzyme linked immunosorbent assay based on monoclonal antibodies for the detection of fumonisin B1, B2, and B3 in maize

(2018) Zhi Li et al.   Analytical Methods

An Amperometric Glucose Biosensor Based on Poly (Pyrrole-2-Carboxylic Acid)/Glucose Oxidase Biocomposite

(2018) Asta Kausaite-Minkstimiene et al.   ELECTROANALYSIS

History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology

(2018) Yoshizumi Ishino et al.   JOURNAL OF BACTERIOLOGY

Optimized CRISPR-Cpf1 system for genome editing in zebrafish

(2018) Juan P. Fernandez et al.   METHODS

Chemically Modified Cpf1-CRISPR RNAs Mediate Efficient Genome Editing in Mammalian Cells

(2018) Moira A. McMahon et al.   MOLECULAR THERAPY

Real-time observation of DNA target interrogation and product release by the RNA-guided endonuclease CRISPR Cpf1 (Cas12a)

(2018) Digvijay Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity

(2018) Janice S. Chen et al.   SCIENCE

Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6

(2018) Jonathan S. Gootenberg et al.   SCIENCE

Cas9 versus Cas12a/Cpf1: Structure-function comparisons and implications for genome editing

(2018) Daan C. Swarts et al.   Wiley Interdisciplinary Reviews-RNA

Detecting pathogens with Zinc-Finger, TALE and CRISPR- based programmable nucleic acid binding proteins

(2018) Angelo C. Batista et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Kinetic Basis for DNA Target Specificity of CRISPR-Cas12a

(2018) Isabel Strohkendl et al.   MOLECULAR CELL

Molecular mechanisms of CRISPR–Cas spacer acquisition

(2018) Jon McGinn et al.   NATURE REVIEWS MICROBIOLOGY

Targeted delivery of CRISPR-Cas9 ribonucleoprotein into arthropod ovaries for heritable germline gene editing

(2018) Duverney Chaverra-Rodriguez et al.   Nature Communications

Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1

(2017) Takashi Yamano et al.   MOLECULAR CELL

Diversity and evolution of class 2 CRISPR–Cas systems

(2017) Sergey Shmakov et al.   NATURE REVIEWS MICROBIOLOGY

A ‘new lease of life’: FnCpf1 possesses DNA cleavage activity for genome editing in human cells

(2017) Mengjun Tu et al.   NUCLEIC ACIDS RESEARCH

CRISPR/Cpf1 enables fast and simple genome editing of Saccharomyces cerevisiae

(2017) René Verwaal et al.   YEAST

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

Flexible integration of free-standing nanowires into silicon photonics

(2017) Bigeng Chen et al.   Nature Communications

Genome editing of the HIV co-receptors CCR5 and CXCR4 by CRISPR-Cas9 protects CD4+ T cells from HIV-1 infection

(2017) Zhepeng Liu et al.   Cell and Bioscience

ASSESSING THE IMPACT OF A NEWLY INTRODUCED ELECTRONIC PRESCRIBING SYSTEM ACROSS A PAEDIATRIC DEPARTMENT – LESSONS LEARNED

(2016) Anastasia Tsyben et al.   ARCHIVES OF DISEASE IN CHILDHOOD

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA

(2016) Takashi Yamano et al.   CELL

Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition

(2016) Pu Gao et al.   CELL RESEARCH

Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9

(2016) Seiichi Hirano et al.   MOLECULAR CELL

Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome

(2016) Maximilian Müller et al.   MOLECULAR THERAPY

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA

(2016) Ines Fonfara et al.   NATURE

The crystal structure of Cpf1 in complex with CRISPR RNA

(2016) De Dong et al.   NATURE

New CRISPR–Cas systems from uncultivated microbes

(2016) David Burstein et al.   NATURE

Generation of knockout mice by Cpf1-mediated gene targeting

(2016) Yongsub Kim et al.   NATURE BIOTECHNOLOGY

Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins

(2016) Junho K Hur et al.   NATURE BIOTECHNOLOGY

Multiplex gene editing by CRISPR–Cpf1 using a single crRNA array

(2016) Bernd Zetsche et al.   NATURE BIOTECHNOLOGY

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

(2016) Daesik Kim et al.   NATURE BIOTECHNOLOGY

A genome-wide CRISPR screen identifies a restricted set of HIV host dependency factors

(2016) Ryan J Park et al.   NATURE GENETICS

In vivo high-throughput profiling of CRISPR–Cpf1 activity

(2016) Hui K Kim et al.   NATURE METHODS

Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems

(2016) Prarthana Mohanraju et al.   SCIENCE

Control of Mosquito-Borne Infectious Diseases: Sex and Gene Drive

(2016) Zach N. Adelman et al.   TRENDS IN PARASITOLOGY

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

The roles of CRISPR–Cas systems in adaptive immunity and beyond

(2015) Rodolphe Barrangou   CURRENT OPINION IN IMMUNOLOGY

Self-Oriented Immobilization of DNA Polymerase Tagged by Titanium-Binding Peptide Motif

(2015) Hirokazu Nishida et al.   LANGMUIR

Expanding the Biologist’s Toolkit with CRISPR-Cas9

(2015) Samuel H. Sternberg et al.   MOLECULAR CELL

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

(2015) Sergey Shmakov et al.   MOLECULAR CELL

In vivo genome editing using Staphylococcus aureus Cas9

(2015) F. Ann Ran et al.   NATURE

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Targeted gene editing by transfection ofin vitroreconstitutedStreptococcus thermophilusCas9 nuclease complex

(2015) Monika Glemzaite et al.   RNA Biology

Cutting it close: CRISPR-associated endoribonuclease structure and function

(2015) Megan L. Hochstrasser et al.   TRENDS IN BIOCHEMICAL SCIENCES

CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes

(2015) Puping Liang et al.   Protein & Cell

Development and Applications of CRISPR-Cas9 for Genome Engineering

(2014) Patrick D. Hsu et al.   CELL

Electrochemical Impedance Spectroscopy Based Evaluation of 1,10-Phenanthroline-5,6-dione and Glucose Oxidase Modified Graphite Electrode

(2014) Arunas Ramanavicius et al.   ELECTROCHIMICA ACTA

CRISPR/Cas9 for genome editing: progress, implications and challenges

(2014) F. Zhang et al.   HUMAN MOLECULAR GENETICS

The Role of CRISPR-Cas Systems in Virulence of Pathogenic Bacteria

(2014) R. Louwen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Unravelling the structural and mechanistic basis of CRISPR–Cas systems

(2014) John van der Oost et al.   NATURE REVIEWS MICROBIOLOGY

The new frontier of genome engineering with CRISPR-Cas9

(2014) J. A. Doudna et al.   SCIENCE

CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea

(2013) Rotem Sorek et al.   Annual Review of Biochemistry

What is next generation sequencing?

(2013) Sam Behjati et al.   Archives of Disease in Childhood-Education and Practice Edition

Molecular mechanisms of CRISPR-mediated microbial immunity

(2013) Giedrius Gasiunas et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

RNA-Guided Human Genome Engineering via Cas9

(2013) P. Mali et al.   SCIENCE

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Comparative study of surface plasmon resonance, electrochemical and electroassisted chemiluminescence methods based immunosensor for the determination of antibodies against human growth hormone

(2012) Almira Ramanaviciene et al.   BIOSENSORS & BIOELECTRONICS

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

(2012) G. Gasiunas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery

(2012) A. W. Bronkhorst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation

(2011) Devaki Bhaya et al.   Annual Review of Genetics

Gene editing: not just for translation anymore

(2011) Moira A McMahon et al.   NATURE METHODS

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

(2011) Rimantas Sapranauskas et al.   NUCLEIC ACIDS RESEARCH

Biosensors with label-free detection designed for diagnostic applications

(2010) Bastian E. Rapp et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Structural and Functional Studies of Archaeal Viruses

(2009) C. Martin Lawrence et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Physical Chemistry of DNA Viruses

(2008) Charles M. Knobler et al.   Annual Review of Physical Chemistry

Gold nanoparticle-based electrochemical biosensors

(2008) José M. Pingarrón et al.   ELECTROCHIMICA ACTA

Preparation and application of polymer-grafted magnetic nanoparticles for lipase immobilization

(2008) Yang Yong et al.   JOURNAL OF MAGNETISM AND MAGNETIC MATERIALS

Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics

(2008) T. F. F. Ng et al.   JOURNAL OF VIROLOGY

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE