Navigating the trade‐offs between environmental DNA and conventional field surveys for improved amphibian monitoring

Improving the detection of rare native fish species in environmental DNA metabarcoding surveys

(2021) Jack Rojahn et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Meta‐analysis shows that environmental DNA outperforms traditional surveys, but warrants better reporting standards

(2021) Julija Fediajevaite et al.   Ecology and Evolution

Environmental DNA metabarcoding elucidates patterns of fish colonisation and co‐occurrences with amphibians in temperate wetlands created for biodiversity

(2021) Ineta Kačergytė et al.   FRESHWATER BIOLOGY

Resilience of native amphibian communities following catastrophic drought: Evidence from a decade of regional-scale monitoring

(2021) Wynne E. Moss et al.   BIOLOGICAL CONSERVATION

From eDNA to citizen science: emerging tools for the early detection of invasive species

(2020) Eric R Larson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Spatial and temporal patterns of environmental DNA detection to inform sampling protocols in lentic and lotic systems

(2020) Mallory E. Bedwell et al.   Ecology and Evolution

Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects

(2020) Kingsly C. Beng et al.   BIODIVERSITY AND CONSERVATION

Identifying error and accurately interpreting eDNA metabarcoding results: A case study to detect vertebrates at arid zone waterholes

(2020) Elise M. Furlan et al.   Molecular Ecology Resources

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA

(2020) Beverly McClenaghan et al.   PLoS One

Using environmental DNA to monitor the spatial distribution of the California Tiger Salamander

(2020) Shannon Rose Kieran et al.   Journal of Fish and Wildlife Management

Field storage of water samples affects measured environmental DNA concentration and detection

(2020) Amanda N. Curtis et al.   LIMNOLOGY

Leveraging eDNA to expand the study of hybrid zones

(2020) Kathryn A. Stewart et al.   MOLECULAR ECOLOGY

Comparing high throughput sequencing and real time qPCR for characterizing entomopathogenic nematode biogeography

(2020) Alexandros Dritsoulas et al.   SOIL BIOLOGY & BIOCHEMISTRY

Designing environmental DNA surveys in complex aquatic systems: Backpack sampling for rare amphibians in Sierra Nevada meadows

(2020) Karen L. Pope et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Multispecies models reveal that eDNA metabarcoding is more sensitive than backpack electrofishing for conducting fish surveys in freshwater streams

(2020) Emily F. McColl‐Gausden et al.   MOLECULAR ECOLOGY

Monitoring of spatiotemporal occupancy patterns of fish and amphibian species in a lentic aquatic system using environmental DNA

(2020) Rein Brys et al.   MOLECULAR ECOLOGY

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

(2019) Jianlong Li et al.   JOURNAL OF APPLIED ECOLOGY

A comparison of droplet digital polymerase chain reaction ( PCR ), quantitative PCR and metabarcoding for species‐specific detection in environmental DNA

(2019) Susanna A Wood et al.   Molecular Ecology Resources

Non‐specific amplification compromises environmental DNA metabarcoding with COI

(2019) Rupert A. Collins et al.   Methods in Ecology and Evolution

An effective method for ecosystem‐scale manipulation of bird abundance and species richness

(2019) Chelsea L. Wood et al.   Ecology and Evolution

Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals

(2019) Lynsey R. Harper et al.   BIOLOGICAL CONSERVATION

Degradation and dispersion limit environmental DNA detection of rare amphibians in wetlands: Increasing efficacy of sampling designs

(2018) Caren S. Goldberg et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Evaluation of environmental DNA to detect Sistrurus catenatus and Ophidiomyces ophiodiicola in crayfish burrows

(2018) Sarah J. Baker et al.   Conservation Genetics Resources

Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus )

(2018) Lynsey R. Harper et al.   Ecology and Evolution

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Environmental DNA sampling as a surveillance tool for cane toad Rhinella marina introductions on offshore islands

(2018) R. Tingley et al.   BIOLOGICAL INVASIONS

Drought attenuates the impact of fish on aquatic macroinvertebrate richness and community composition

(2018) Travis McDevitt-Galles et al.   FRESHWATER BIOLOGY

Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds

(2018) Lynsey R. Harper et al.   HYDROBIOLOGIA

Accuracy, limitations and cost efficiency of eDNA-based community survey in tropical frogs

(2018) Miklós Bálint et al.   Molecular Ecology Resources

Inferring presence of the western toad (Anaxyrus boreas) species complex using environmental DNA

(2018) Thomas W. Franklin et al.   Global Ecology and Conservation

Using eDNA, sediment subfossils, and zooplankton nets to detect invasive spiny water flea (Bythotrephes longimanus)

(2018) Jake R. Walsh et al.   BIOLOGICAL INVASIONS

Development and application of environmental DNA surveillance for the threatened crucian carp (Carassius carassius )

(2018) Lynsey R. Harper et al.   FRESHWATER BIOLOGY

Emerging opportunities and challenges for passive acoustics in ecological assessment and monitoring

(2018) Rory Gibb et al.   Methods in Ecology and Evolution

Accounting for observation processes across multiple levels of uncertainty improves inference of species distributions and guides adaptive sampling of environmental DNA

(2018) Amy J. Davis et al.   Ecology and Evolution

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

ednaoccupancy : An r package for multiscale occupancy modelling of environmental DNA data

(2017) Robert M. Dorazio et al.   Molecular Ecology Resources

Evaluation of eDNA for groundwater invertebrate detection and monitoring: a case study with endangered Stygobromus (Amphipoda: Crangonyctidae)

(2017) Matthew L. Niemiller et al.   Conservation Genetics Resources

Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes

(2017) Katy E. Klymus et al.   PLoS One

DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports

(2017) Yaisel J. Borrell et al.   PLoS One

Improving herpetological surveys in eastern North America using the environmental DNA method

(2016) Anaïs Lacoursière-Roussel et al.   GENOME

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

The importance of including imperfect detection models in eDNA experimental design

(2016) Janna R. Willoughby et al.   Molecular Ecology Resources

Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species

(2016) Molly C. Schmelzle et al.   Molecular Ecology Resources

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples

(2016) Judith Schneider et al.   PLoS One

Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms

(2016) Lesley S. de Souza et al.   PLoS One

Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples

(2015) Eva Egelyng Sigsgaard et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Development and application of an eDNA method to detect and quantify a pathogenic parasite in aquatic ecosystems

(2015) J. R. Huver et al.   ECOLOGICAL APPLICATIONS

Integrating occupancy models and structural equation models to understand species occurrence

(2015) Maxwell B. Joseph et al.   ECOLOGY

Emerging Technologies to Conserve Biodiversity

(2015) Stuart L. Pimm et al.   TRENDS IN ECOLOGY & EVOLUTION

unmarked: AnRPackage for Fitting Hierarchical Models of Wildlife Occurrence and Abundance

(2015) Ian Fiske et al.   Journal of Statistical Software

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Biodiversity decreases disease through predictable changes in host community competence

(2013) Pieter T. J. Johnson et al.   NATURE

Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

(2013) Teruhiko Takahara et al.   PLoS One

Living fast and dying of infection: host life history drives interspecific variation in infection and disease risk

(2012) Pieter T. J. Johnson et al.   ECOLOGY LETTERS

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

Bioinformatic challenges for DNA metabarcoding of plants and animals

(2012) ERIC COISSAC et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders

(2011) Caren S. Goldberg et al.   PLoS One

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

Invasive hybrid tiger salamander genotypes impact native amphibians

(2009) M. E. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA