Multispecies models reveal that eDNA metabarcoding is more sensitive than backpack electrofishing for conducting fish surveys in freshwater streams
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Title
Multispecies models reveal that eDNA metabarcoding is more sensitive than backpack electrofishing for conducting fish surveys in freshwater streams
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2020-09-24
DOI
10.1111/mec.15644
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Note: Only part of the references are listed.- Monitoring the silver carp invasion in Africa: a case study using environmental DNA (eDNA) in dangerous watersheds
- (2020) Steven Crookes et al. NeoBiota
- Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods
- (2019) Kazuya Fujii et al. PLoS One
- Assessing the influence of sample tagging and library preparation on DNA metabarcoding
- (2019) Vera M. A. Zizka et al. Molecular Ecology Resources
- Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals
- (2019) Allan D. McDevitt et al. JOURNAL OF FISH BIOLOGY
- From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?
- (2019) Irene Calderón‐Sanou et al. JOURNAL OF BIOGEOGRAPHY
- Understanding sequencing data as compositions: an outlook and review
- (2018) Thomas P Quinn et al. BIOINFORMATICS
- Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
- (2018) Maura Costello et al. BMC GENOMICS
- Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool
- (2018) Ida Baerholm Schnell et al. Molecular Ecology Resources
- Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus )
- (2018) Lynsey R. Harper et al. Ecology and Evolution
- Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation
- (2018) Didier Pont et al. Scientific Reports
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- Detecting invertebrate species in archived collections using next-generation sequencing
- (2017) Melissa E. Carew et al. Molecular Ecology Resources
- The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo’orea coral reefs, French Polynesia
- (2017) Emma Ransome et al. PLoS One
- Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
- (2017) Mark Y. Stoeckle et al. PLoS One
- Controls on eDNA movement in streams: Transport, Retention, and Resuspension
- (2017) Arial J. Shogren et al. Scientific Reports
- Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
- (2016) Jennifer L.A. Shaw et al. BIOLOGICAL CONSERVATION
- Environmental DNA (eDNA) detects the invasive rusty crayfish Orconectes rusticus at low abundances
- (2016) Matthew M. Dougherty et al. JOURNAL OF APPLIED ECOLOGY
- Using environmental (e)DNA sequencing for aquatic biodiversity surveys: a beginner’s guide
- (2016) Jennifer L. A. Shaw et al. MARINE AND FRESHWATER RESEARCH
- Controlling populations of invasive pygmy mussel (Xenostrobus securis) through citizen science and environmental DNA
- (2016) Laura Miralles et al. MARINE POLLUTION BULLETIN
- Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
- (2016) Bernd Hänfling et al. MOLECULAR ECOLOGY
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- How to limit false positives in environmental DNA and metabarcoding?
- (2016) Gentile Francesco Ficetola et al. Molecular Ecology Resources
- Estimating species richness using environmental DNA
- (2016) Brett P. Olds et al. Ecology and Evolution
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities
- (2016) Nicholas K. M. Lim et al. Royal Society Open Science
- Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA
- (2016) Eva Egelyng Sigsgaard et al. Nature Ecology & Evolution
- Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms
- (2016) Lesley S. de Souza et al. PLoS One
- Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms
- (2015) Katherine M. Strickler et al. BIOLOGICAL CONSERVATION
- Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)
- (2015) Jeremy Biggs et al. BIOLOGICAL CONSERVATION
- Environmental DNA sampling is more sensitive than a traditional survey technique for detecting an aquatic invader
- (2015) Adam S. Smart et al. ECOLOGICAL APPLICATIONS
- Modeling false positive detections in species occurrence data under different study designs
- (2015) Thierry Chambert et al. ECOLOGY
- Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA
- (2015) Jesse A. Port et al. MOLECULAR ECOLOGY
- Statistical approaches to account for false-positive errors in environmental DNA samples
- (2015) José J. Lahoz-Monfort et al. Molecular Ecology Resources
- Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding
- (2015) Nathan T. Evans et al. Molecular Ecology Resources
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- GenBank
- (2015) Karen Clark et al. NUCLEIC ACIDS RESEARCH
- Evaluating a multigene environmental DNA approach for biodiversity assessment
- (2015) Alexei J. Drummond et al. GigaScience
- From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows
- (2015) Dáithí C. Murray et al. PLoS One
- Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons
- (2015) Margaret E. Hunter et al. PLoS One
- The Dual Challenges of Generality and Specificity When Developing Environmental DNA Markers for Species and Subspecies of Oncorhynchus
- (2015) Taylor M. Wilcox et al. PLoS One
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Factors Influencing Successful Eradication of Nonnative Brook Trout from Four Small Rocky Mountain Streams Using Electrofishing
- (2014) Bradley B. Shepard et al. NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT
- The Release Rate of Environmental DNA from Juvenile and Adult Fish
- (2014) Atsushi Maruyama et al. PLoS One
- Particle size distribution and optimal capture of aqueous macrobial eDNA
- (2014) Cameron R. Turner et al. Methods in Ecology and Evolution
- An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
- (2014) Douglas W Fadrosh et al. Microbiome
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- Site occupancy models in the analysis of environmental DNA presence/absence surveys: a case study of an emerging amphibian pathogen
- (2013) Benedikt R. Schmidt et al. Methods in Ecology and Evolution
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia
- (2012) Wasim Shehzad et al. PLoS One
- A hybrid zone and bidirectional introgression between two catadromous species: Australian bass Macquaria novemaculeata and estuary perch Macquaria colonorum
- (2011) K. Shaddick et al. JOURNAL OF FISH BIOLOGY
- Monitoring endangered freshwater biodiversity using environmental DNA
- (2011) PHILIP FRANCIS THOMSEN et al. MOLECULAR ECOLOGY
- ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
- (2011) Tiayyba Riaz et al. NUCLEIC ACIDS RESEARCH
- Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders
- (2011) Caren S. Goldberg et al. PLoS One
- “Sight-unseen” detection of rare aquatic species using environmental DNA
- (2011) Christopher L. Jerde et al. Conservation Letters
- An In silico approach for the evaluation of DNA barcodes
- (2010) Gentile Ficetola et al. BMC GENOMICS
- DNA barcoding for ecologists
- (2008) Alice Valentini et al. TRENDS IN ECOLOGY & EVOLUTION
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