Mito‐nuclear discordance at a mimicry color transition zone in bumble bee Bombus melanopygus

Developmental transcriptomics reveals a gene network driving mimetic color variation in a bumble bee

(2021) Sarthok Rasique Rahman et al.   Genome Biology and Evolution

Substantial genetic divergence and lack of recent gene flow support cryptic speciation in a colour polymorphic bumble bee ( Bombus bifarius ) species complex

(2020) Guillaume Ghisbain et al.   SYSTEMATIC ENTOMOLOGY

Widespread polytypic species or complexes of local species? Revising bumblebees of the subgenus Melanobombus world-wide (Hymenoptera, Apidae, Bombus)

(2020) Paul H. Williams et al.   European Journal of Taxonomy

Movement of a Heliconius hybrid zone over 30 years: A Bayesian approach

(2019) Timothy J. Thurman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Unsupervised machine learning reveals mimicry complexes in bumblebees occur along a perceptual continuum

(2019) Briana D. Ezray et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integrative taxonomy of an arctic bumblebee species complex highlights a new cryptic species (Apidae: Bombus)

(2019) Baptiste Martinet et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Following the cold: geographical differentiation between interglacial refugia and speciation in the arcto-alpine species complex Bombus monticola (Hymenoptera: Apidae)

(2018) BAPTISTE MARTINET et al.   SYSTEMATIC ENTOMOLOGY

A bioinformatics approach to identifying Wolbachia infections in arthropods

(2018) Jane Pascar et al.   PeerJ

Phylogeny and population genetic analyses reveals cryptic speciation in the Bombus fervidus species complex (Hymenoptera: Apidae)

(2018) Jonathan B. Koch et al.   PLoS One

Mimetic Divergence and the Speciation Continuum in the Mimic Poison Frog Ranitomeya imitator

(2016) Evan Twomey et al.   AMERICAN NATURALIST

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

StableHeliconiusbutterfly hybrid zones are correlated with a local rainfall peak at the edge of the Amazon basin

(2014) Neil Rosser et al.   EVOLUTION

Detection and characterization of Wolbachia infection in silkworm

(2014) Xingfu Zha et al.   GENETICS AND MOLECULAR BIOLOGY

PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

(2013) Alexandra Pavlova et al.   EVOLUTION

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Geographical patterns of genetic divergence in the widespread Mesoamerican bumble bee Bombus ephippiatus (Hymenoptera: Apidae)

(2012) Michelle A. Duennes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Mimetic colour pattern evolution in the highly polymorphicBombus trifasciatus(Hymenoptera: Apidae) species complex and its comimics

(2012) HEATHER M. HINES et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Patterns of range-wide genetic variation in six North American bumble bee (Apidae: Bombus) species

(2011) JEFFREY D. LOZIER et al.   MOLECULAR ECOLOGY

Wolbachiainfections in bees (Anthophila) and possible implications for DNA barcoding

(2011) MICHAEL GERTH et al.   SYSTEMATICS AND BIODIVERSITY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Nuclear and mitochondrial DNA reveal contrasting evolutionary processes in populations of deer mice (Peromyscus maniculatus)

(2009) DOU-SHUAN YANG et al.   MOLECULAR ECOLOGY

A hybrid zone provides evidence for incipient ecological speciation inHeliconiusbutterflies

(2008) CARLOS F. ARIAS et al.   MOLECULAR ECOLOGY

Widespread mito-nuclear discordance with evidence for introgressive hybridization and selective sweeps inLycaeides

(2008) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation

(2008) J. Mallet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Historical Biogeography, Divergence Times, and Diversification Patterns of Bumble Bees (Hymenoptera: Apidae: Bombus)

(2008) Heather M. Hines   SYSTEMATIC BIOLOGY