A bioinformatics approach to identifying Wolbachia infections in arthropods

Feminizing Wolbachia influence microbiota composition in the terrestrial isopod Armadillidium vulgare

(2018) Jessica Dittmer et al.   Scientific Reports

Effect of naturally occurringWolbachiainAnopheles gambiae s.l.mosquitoes from Mali onPlasmodium falciparummalaria transmission

(2017) Fabio M. Gomes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Short reads from honey bee (Apis sp.) sequencing projects reflect microbial associate diversity

(2017) Michael Gerth et al.   PeerJ

Diversity and evolution of sex determination systems in terrestrial isopods

(2017) Thomas Becking et al.   Scientific Reports

Sex-specific mitonuclear epistasis and the evolution of mitochondrial bioenergetics, ageing, and life history in seed beetles

(2016) Mirko Đorđević et al.   EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis

(2016) Filip Husnik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Birth of a W sex chromosome by horizontal transfer ofWolbachiabacterial symbiont genome

(2016) Sébastien Leclercq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wolbachia pipientis should not be split into multiple species: A response to Ramírez-Puebla et al., “Species in Wolbachia ? Proposal for the designation of ‘ Candidatus Wolbachia bourtzisii’, ‘ Candidatus Wolbachia onchocercicola’, ‘ Candidatus Wolbachia blaxteri’, ‘ Candidatus Wolbachia brugii’, ‘ Candidatus Wolbachia taylori’, ‘ Candidatus Wolbachia collembolicola’ and ‘ Candidatus Wolbachia multihospitum’ for the different species within Wolbachia supergroups”

(2016) Amelia R.I. Lindsey et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Hungarosoma bokori Verhoeff, 1928 (Diplopoda: Chordeumatida): new insights into its taxonomy, systematics, molecular genetics, biogeography and ecology

(2016) ANDREJ MOCK et al.   ZOOTAXA

Genomes of Candidatus Wolbachia Bourtzisii wDacA and Candidatus Wolbachia Pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae)

(2016) S. T. Ramirez-Puebla et al.   G3-Genes Genomes Genetics

Comparative Genomics of a Parthenogenesis-Inducing Wolbachia Symbiont

(2016) Amelia R. I. Lindsey et al.   G3-Genes Genomes Genetics

Candidate pathogenicity islands in the genome of ‘CandidatusRickettsiella isopodorum’, an intracellular bacterium infecting terrestrial isopod crustaceans

(2016) YaDong Wang et al.   PeerJ

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

(2015) Martijn F.L. Derks et al.   Genome Biology and Evolution

New Wolbachia supergroups detected in quill mites (Acari: Syringophilidae)

(2015) Eliza Glowska et al.   INFECTION GENETICS AND EVOLUTION

America's red gold: multiple lineages of cultivated cochineal in Mexico

(2015) Michael G. Campana et al.   Ecology and Evolution

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Detection and characterization of Wolbachia infection in silkworm

(2014) Xingfu Zha et al.   GENETICS AND MOLECULAR BIOLOGY

Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads

(2014) Frederic Bertels et al.   MOLECULAR BIOLOGY AND EVOLUTION

Anterior Foregut Microbiota of the Glassy-Winged Sharpshooter Explored Using Deep 16S rRNA Gene Sequencing from Individual Insects

(2014) Elizabeth E. Rogers et al.   PLoS One

Evidence of natural Wolbachia infections in field populations of Anopheles gambiae

(2014) Francesco Baldini et al.   Nature Communications

Phylogenomic analyses uncover origin and spread of the Wolbachia pandemic

(2014) Michael Gerth et al.   Nature Communications

Diversity and evolution of theWolbachiaendosymbionts ofBemisia(Hemiptera: Aleyrodidae) whiteflies

(2014) Xiao-Li Bing et al.   Ecology and Evolution

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genomic Evolution of the Pathogenic Wolbachia Strain, wMelPop

(2013) Megan Woolfit et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cannibalism and Predation as Paths for Horizontal Passage of Wolbachia between Terrestrial Isopods

(2013) Winka Le Clec’h et al.   PLoS One

Comparative Genomics of Wolbachia and the Bacterial Species Concept

(2013) Kirsten Maren Ellegaard et al.   PLoS Genetics

Diversity and recombination in Wolbachia and Cardinium from Bryobia spider mites

(2012) Vera I D Ros et al.   BMC MICROBIOLOGY

Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis

(2012) A. C. Darby et al.   GENOME RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

A Veritable Menagerie of Heritable Bacteria from Ants, Butterflies, and Beyond: Broad Molecular Surveys and a Systematic Review

(2012) Jacob A. Russell et al.   PLoS One

Survey of Endosymbionts in the Diaphorina citri Metagenome and Assembly of a Wolbachia wDi Draft Genome

(2012) Surya Saha et al.   PLoS One

Widespread Wolbachia infection in terrestrial isopods and other crustaceans

(2012) Richard Cordaux et al.   ZooKeys

Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster

(2012) Mark F. Richardson et al.   PLoS Genetics

Multiple Wolbachia infections in Rhagoletis pomonella

(2011) Hannes Schuler et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Population structure in relation to host-plant ecology and Wolbachia infestation in the comma butterfly

(2011) U. KODANDARAMAIAH et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Can Wolbachia be used to control malaria?

(2011) Thomas Walker et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Clonal genetic variation in a Wolbachia-infected asexual wasp: horizontal transmission or historical sex?

(2011) KEN KRAAIJEVELD et al.   MOLECULAR ECOLOGY

Wolbachia detection: an assessment of standard PCR Protocols

(2011) P. M. SIMÕES et al.   Molecular Ecology Resources

Successful establishment of Wolbachia in Aedes populations to suppress dengue transmission

(2011) A. A. Hoffmann et al.   NATURE

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Detection and Characterization of Wolbachia Infections in Natural Populations of Aphids: Is the Hidden Diversity Fully Unraveled?

(2011) Antonis A. Augustinos et al.   PLoS One

Horizontal gene transfer between bacteria and animals

(2011) Julie C. Dunning Hotopp   TRENDS IN GENETICS

The impact of endosymbionts on the evolution of host sex-determination mechanisms

(2011) Richard Cordaux et al.   TRENDS IN GENETICS

Wolbachia Infections Are Virulent and Inhibit the Human Malaria Parasite Plasmodium Falciparum in Anopheles Gambiae

(2011) Grant L. Hughes et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Multiple gains and losses of Wolbachia symbionts across a tribe of fungus-growing ants

(2010) C. L. FROST et al.   MOLECULAR ECOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Wolbachia: more than just a bug in insects genitals

(2009) Aggeliki Saridaki et al.   CURRENT OPINION IN MICROBIOLOGY

An endosymbiotic bacterium in a plant-parasitic nematode: Member of a new Wolbachia supergroup

(2009) Annelies Haegeman et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Molecular Phylogeny ofWolbachiaStrains in Arthropod Hosts Based ongroE-Homologous Gene Sequences

(2009) Itsanun Wiwatanaratanabutr et al.   ZOOLOGICAL SCIENCE

Variation in Antiviral Protection Mediated by Different Wolbachia Strains in Drosophila simulans

(2009) Sheree E. Osborne et al.   PLoS Pathogens

How Diverse Is the Genus Wolbachia? Multiple-Gene Sequencing Reveals a Putatively New Wolbachia Supergroup Recovered from Spider Mites (Acari: Tetranychidae)

(2008) V. I. D. Ros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The diversity of reproductive parasites among arthropods: Wolbachia do not walk alone

(2008) Olivier Duron et al.   BMC BIOLOGY

MODES OF ACQUISITION OFWOLBACHIA: HORIZONTAL TRANSFER, HYBRID INTROGRESSION, AND CODIVERGENCE IN THENASONIASPECIES COMPLEX

(2008) Rhitoban Raychoudhury et al.   EVOLUTION

How many species are infected with Wolbachia? – a statistical analysis of current data

(2008) Kirsten Hilgenboecker et al.   FEMS MICROBIOLOGY LETTERS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

A Bioinformatician's Guide to Metagenomics

(2008) V. Kunin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Intense Transpositional Activity of Insertion Sequences in an Ancient Obligate Endosymbiont

(2008) R. Cordaux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Wolbachia Mediate Variation of Host Immunocompetence

(2008) Christine Braquart-Varnier et al.   PLoS One

The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster

(2008) Luís Teixeira et al.   PLOS BIOLOGY