Persistence of plant-mediated microbial soil legacy effects in soil and inside roots

Plant functional group drives the community structure of saprophytic fungi in a grassland biodiversity experiment

(2020) Davide Francioli et al.   PLANT AND SOIL

Plant community composition steers grassland vegetation via soil legacy effects

(2020) Robin Heinen et al.   ECOLOGY LETTERS

Above‐ground plant metabolomic responses to plant–soil feedbacks and herbivory

(2020) Martine Huberty et al.   JOURNAL OF ECOLOGY

How plant–soil feedbacks influence the next generation of plants

(2020) Jonathan R. De Long et al.   ECOLOGICAL RESEARCH

Rhizosphere fungi actively assimilating plant-derived carbon in a grassland soil

(2020) S.E. Hannula et al.   Fungal Ecology

Plant-Growth Promotion and Biocontrol Properties of Three Streptomyces spp. Isolates to Control Bacterial Rice Pathogens

(2019) Zulma Rocío Suárez-Moreno et al.   Frontiers in Microbiology

Plant geographic origin and phylogeny as potential drivers of community structure in root-inhabiting fungi

(2019) Akihiro Koyama et al.   JOURNAL OF ECOLOGY

Fungal community assembly in soils and roots under plant invasion and nitrogen deposition

(2019) Michala L. Phillips et al.   Fungal Ecology

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands

(2019) Franziska Wemheuer et al.   Scientific Reports

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen

(2019) S. Emilia Hannula et al.   ENVIRONMENTAL MICROBIOLOGY

Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities

(2019) S. Emilia Hannula et al.   mBio

Steering root microbiomes of a commercial horticultural crop with plant-soil feedbacks

(2019) Hai-kun Ma et al.   APPLIED SOIL ECOLOGY

Plant competition alters the temporal dynamics of plant-soil feedbacks

(2018) T. Martijn Bezemer et al.   JOURNAL OF ECOLOGY

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

(2018) Liesje Mommer et al.   NEW PHYTOLOGIST

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Linking ecology and plant pathology to unravel the importance of soil-borne fungal pathogens in species-rich grasslands

(2018) Eline A. Ampt et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Linking root exudates to functional plant traits

(2018) Katharina Herz et al.   PLoS One

Why are plant-soil feedbacks so unpredictable, and what to do about it?

(2018) Jonathan R. De Long et al.   FUNCTIONAL ECOLOGY

Mechanisms of plant–soil feedback: interactions among biotic and abiotic drivers

(2018) Jonathan A. Bennett et al.   NEW PHYTOLOGIST

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Fungal diversity regulates plant-soil feedbacks in temperate grassland

(2018) Marina Semchenko et al.   Science Advances

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Beyond biomass: Soil feedbacks are transient over plant life stages and alter fitness

(2017) Jan-Hendrik Dudenhöffer et al.   JOURNAL OF ECOLOGY

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Plant and root endophyte assembly history: interactive effects on native and exotic plants

(2016) Benjamin A. Sikes et al.   ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Plant-soil feedbacks: role of plant functional group and plant traits

(2016) Roeland Cortois et al.   JOURNAL OF ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Arbuscular mycorrhizal fungi counteract the Janzen-Connell effect of soil pathogens

(2015) Minxia Liang et al.   ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Complementary plant nutrient-acquisition strategies promote growth of neighbour species

(2014) Francois P. Teste et al.   FUNCTIONAL ECOLOGY

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

Biotic plant-soil feedbacks across temporal scales

(2013) Paul Kardol et al.   JOURNAL OF ECOLOGY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The extent of mycorrhizal colonization of roots and its influence on plant growth and phosphorus content

(2013) Kathleen K. Treseder   PLANT AND SOIL

Soil biotic legacy effects of extreme weather events influence plant invasiveness

(2013) A. Meisner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

Legacy effects of aboveground-belowground interactions

(2012) Olga Kostenko et al.   ECOLOGY LETTERS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Intra- and interspecific plant-soil interactions, soil legacies and priority effects during old-field succession

(2011) Tess F. J. van de Voorde et al.   JOURNAL OF ECOLOGY

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Plant ontogeny and chemical defence: older seedlings are better defended

(2009) Arnaud Elger et al.   OIKOS

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

JANZEN-CONNELL EFFECTS ARE WIDESPREAD AND STRONG ENOUGH TO MAINTAIN DIVERSITY IN GRASSLANDS

(2008) Jana S. Petermann et al.   ECOLOGY

Plant-soil feedbacks: a meta-analytical review

(2008) Andrew Kulmatiski et al.   ECOLOGY LETTERS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY