Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Spatial vs. temporal controls over soil fungal community similarity at continental and global scales

(2019) Colin Averill et al.   ISME Journal

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

(2018) Rüdiger Ortiz-Álvarez et al.   ISME Journal

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry

(2018) Zishu Liu et al.   mSphere

Strong succession in arbuscular mycorrhizal fungal communities

(2018) Cheng Gao et al.   ISME Journal

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

The wild side of plant microbiomes

(2018) Juan E. Pérez-Jaramillo et al.   Microbiome

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Plant community composition but not plant traits determine the outcome of soil legacy effects on plants and insects

(2017) Robin Heinen et al.   JOURNAL OF ECOLOGY

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Plant-soil feedback and the maintenance of diversity in Mediterranean-climate shrublands

(2017) François P. Teste et al.   SCIENCE

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Plant–Soil Feedback Effects on Growth, Defense and Susceptibility to a Soil-Borne Disease in a Cut Flower Crop: Species and Functional Group Effects

(2017) Hai-Kun Ma et al.   Frontiers in Plant Science

Where, when and how plant-soil feedback matters in a changing world

(2016) Wim H. van der Putten et al.   FUNCTIONAL ECOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Microbial interactions lead to rapid micro-scale successions on model marine particles

(2016) Manoshi S. Datta et al.   Nature Communications

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Species-specific plant-soil feedback effects on above-ground plant-insect interactions

(2015) Martine Kos et al.   JOURNAL OF ECOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

(2015) Bruce C. Thomson et al.   SOIL BIOLOGY & BIOCHEMISTRY

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

Community assembly of ectomycorrhizal fungi along a subtropical secondary forest succession

(2014) Cheng Gao et al.   NEW PHYTOLOGIST

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Seasonal variation in functional properties of microbial communities in beech forest soil

(2013) Marianne Koranda et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial colonization and extinction on marine aggregates: stochastic model of species presence and abundance

(2013) Andrew M. Kramer et al.   Ecology and Evolution

Legacy effects of aboveground-belowground interactions

(2012) Olga Kostenko et al.   ECOLOGY LETTERS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

A quantitative analysis of temporal turnover in aquatic species assemblages across ecosystems

(2010) Jenni J. Korhonen et al.   ECOLOGY

Plants control the seasonal dynamics of microbial N cycling in a beech forest soil by belowground C allocation

(2010) Christina Kaiser et al.   ECOLOGY

Experimental tests of the bacterial distance–decay relationship

(2010) Thomas Bell   ISME Journal

Comparing arbuscular mycorrhizal communities of individual plants in a grassland biodiversity experiment

(2010) Tess F. J. Van De Voorde et al.   NEW PHYTOLOGIST

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

A species concept for bacteria based on adaptive divergence

(2010) Michiel Vos   TRENDS IN MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Interannual variability in species composition explained as seasonally entrained chaos

(2009) V. Dakos et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

JANZEN-CONNELL EFFECTS ARE WIDESPREAD AND STRONG ENOUGH TO MAINTAIN DIVERSITY IN GRASSLANDS

(2008) Jana S. Petermann et al.   ECOLOGY

Testing the assumptions of chronosequences in succession

(2008) Edward A. Johnson et al.   ECOLOGY LETTERS

Disturbance-driven changes in the variability of ecological patterns and processes

(2008) Jennifer M. Fraterrigo et al.   ECOLOGY LETTERS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA