Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

(2018) Nanna B Svenningsen et al.   ISME Journal

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits

(2018) Jonathan W. Leff et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Native soils with their microbiotas elicit a state of alert in tomato plants

(2018) Matteo Chialva et al.   NEW PHYTOLOGIST

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Rhizosphere Microbiomes Modulated by Pre-crops Assisted Plants in Defense Against Plant-Parasitic Nematodes

(2018) Ahmed Elhady et al.   Frontiers in Microbiology

The wild side of plant microbiomes

(2018) Juan E. Pérez-Jaramillo et al.   Microbiome

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Linking the community structure of arbuscular mycorrhizal fungi and plants: a story of interdependence?

(2017) Sebastian Horn et al.   ISME Journal

Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics

(2017) Jonathan A. Bennett et al.   SCIENCE

Plant-soil feedback and the maintenance of diversity in Mediterranean-climate shrublands

(2017) François P. Teste et al.   SCIENCE

Steering Soil Microbiomes to Suppress Aboveground Insect Pests

(2017) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Plant–Soil Feedback Effects on Growth, Defense and Susceptibility to a Soil-Borne Disease in a Cut Flower Crop: Species and Functional Group Effects

(2017) Hai-Kun Ma et al.   Frontiers in Plant Science

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Where, when and how plant-soil feedback matters in a changing world

(2016) Wim H. van der Putten et al.   FUNCTIONAL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Effects of spatial plant-soil feedback heterogeneity on plant performance in monocultures

(2016) E. R. Jasper Wubs et al.   JOURNAL OF ECOLOGY

Plant-soil feedbacks: role of plant functional group and plant traits

(2016) Roeland Cortois et al.   JOURNAL OF ECOLOGY

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

(2016) Kristin Kaiser et al.   Scientific Reports

Molecular profile of microbiota of Finnish commercial compost suppressive against Pythium disease on cucumber plants

(2015) D. Yu et al.   APPLIED SOIL ECOLOGY

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

(2015) Wietse de Boer et al.   PLoS One

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Are plant-soil feedback responses explained by plant traits?

(2014) Catherine Baxendale et al.   NEW PHYTOLOGIST

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior

(2013) Dayakar V. Badri et al.   NEW PHYTOLOGIST

Isolate Identity Determines Plant Tolerance to Pathogen Attack in Assembled Mycorrhizal Communities

(2013) Thaddeus J. Lewandowski et al.   PLoS One

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Unifying concepts and mechanisms in the specificity of plant–enemy interactions

(2012) Luke G. Barrett et al.   TRENDS IN PLANT SCIENCE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The Multifactorial Basis for Plant Health Promotion by Plant-Associated Bacteria

(2011) Young Cheol Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species richness, identity and productivity differentially influence key groups of microbes in grassland soils of contrasting fertility

(2010) G. B. De Deyn et al.   Biology Letters

Deciphering the relative contributions of multiple functions within plant–microbe symbioses

(2010) Benjamin A. Sikes et al.   ECOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Rooting theories of plant community ecology in microbial interactions

(2010) James D. Bever et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE