Global diversity and distribution of mushroom‐inhabiting bacteria

Heterogeneity of the white truffle Tuber magnatum in a limited geographic area of Central‐Southern Italy

(2021) Pamela Monaco et al.   Environmental Microbiology Reports

Structure of Chimpanzee Gut Microbiomes across Tropical Africa

(2021) Clifton P. Bueno de Mesquita et al.   mSystems

Fruitbody chemistry underlies the structure of endofungal bacterial communities across fungal guilds and phylogenetic groups

(2020) Mari Pent et al.   ISME Journal

The bacterial communities of Tuber aestivum: preliminary investigations in Molise region, Southern Italy

(2020) Pamela Monaco et al.   ANNALS OF MICROBIOLOGY

The Effect of Plant Geographical Location and Developmental Stage on Root-Associated Microbiomes of Gymnadenia conopsea

(2020) Min Lin et al.   Frontiers in Microbiology

Holistic assessment of the microbiome dynamics in the substrates used for commercial champignon ( Agaricus bisporus ) cultivation

(2020) Jaime Carrasco et al.   Microbial Biotechnology

Assessing the Plant Growth Promoting and Arsenic Tolerance Potential of Bradyrhizobium japonicum CB1809

(2020) Md Ferdous Seraj et al.   ENVIRONMENTAL MANAGEMENT

Bacterial community dynamics across developmental stages of fungal fruiting bodies

(2020) Daniyal Gohar et al.   FEMS MICROBIOLOGY ECOLOGY

Global patterns and determinants of bacterial communities associated with ectomycorrhizal root tips of Alnus species

(2020) Farzad Aslani et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic assessment of the global diversity and distribution of bacteria and fungi

(2020) Mohammad Bahram et al.   ENVIRONMENTAL MICROBIOLOGY

The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa

(2020) Urmas Kõljalg et al.   Microorganisms

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum

(2019) Richard Splivallo et al.   Frontiers in Microbiology

Global airborne microbial communities controlled by surrounding landscapes and wind conditions

(2019) Romie Tignat-Perrier et al.   Scientific Reports

Chinese Black Truffle-Associated Bacterial Communities of Tuber indicum From Different Geographical Regions With Nitrogen Fixing Bioactivity

(2019) Juan Chen et al.   Frontiers in Microbiology

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

(2018) Mari Pent et al.   ENVIRONMENTAL MICROBIOLOGY

High-level classification of the Fungi and a tool for evolutionary ecological analyses

(2018) Leho Tedersoo et al.   FUNGAL DIVERSITY

Host species effects on bacterial communities associated with the fruiting bodies of Tuber species from the Sichuan Province in Southwest China

(2018) Lei Ye et al.   MYCOLOGICAL PROGRESS

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

The genome and microbiome of a dikaryotic fungus (Inocybe terrigena , Inocybaceae) revealed by metagenomics

(2018) Mohammad Bahram et al.   Environmental Microbiology Reports

Influence of Early Life, Diet, and the Environment on the Microbiome

(2018) Tien S. Dong et al.   Clinical Gastroenterology and Hepatology

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China

(2018) Teng Yang et al.   ISME Journal

The Biogeographical Distribution of Soil Bacterial Communities in the Loess Plateau as Revealed by High-Throughput Sequencing

(2018) Dong Liu et al.   Frontiers in Microbiology

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Abiotic rather than biotic filtering shapes the arbuscular mycorrhizal fungal communities of European seminatural grasslands

(2017) Maarten Van Geel et al.   NEW PHYTOLOGIST

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing

(2017) Jiemin Zhou et al.   Scientific Reports

Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity

(2017) Mari Pent et al.   Frontiers in Microbiology

Soil microbial communities of three major Chinese truffles in southwest China

(2016) Yu Fu et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Polyphagy on unpredictable resources does not exclude host specialization: insects feeding on mushrooms

(2016) Kadri Põldmaa et al.   ECOLOGY

Analysis of Bacterial Diversity and Communities Associated with Tricholoma matsutake Fruiting Bodies by Barcoded Pyrosequencing in Sichuan Province, Southwest China

(2016) Qiang Li et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales

(2016) Gian Maria Niccolò Benucci et al.   MICROBIAL ECOLOGY

Low diversity of planktonic bacteria in the tropical ocean

(2016) Mathias Milici et al.   Scientific Reports

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Arbuscular mycorrhizal fungi act as biostimulants in horticultural crops

(2015) Youssef Rouphael et al.   SCIENTIA HORTICULTURAE

Trichoderma as biostimulant: exploiting the multilevel properties of a plant beneficial fungus

(2015) José López-Bucio et al.   SCIENTIA HORTICULTURAE

Bacteria associated with truffle-fruiting bodies contribute to truffle aroma

(2014) Richard Splivallo et al.   ENVIRONMENTAL MICROBIOLOGY

LotuS: an efficient and user-friendly OTU processing pipeline

(2014) Falk Hildebrand et al.   Microbiome

Black truffle-associated bacterial communities during the development and maturation ofTuber melanosporumascocarps and putative functional roles

(2013) Sanjay Antony-Babu et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeography of ectomycorrhizal fungi associated with alders (Alnusspp.) in relation to biotic and abiotic variables at the global scale

(2013) Sergei Põlme et al.   NEW PHYTOLOGIST

Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis

(2013) Leho Tedersoo et al.   NEW PHYTOLOGIST

Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs

(2012) Takashi Okubo et al.   MICROBES AND ENVIRONMENTS

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography

(2012) CALEB D. PHILLIPS et al.   MOLECULAR ECOLOGY

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

New evidence for nitrogen fixation within the Italian white truffle Tuber magnatum

(2010) Elena Barbieri et al.   Fungal Biology

Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

(2010) Howard Ochman et al.   PLOS BIOLOGY

Highly specialized microbial diversity in hyper-arid polar desert

(2009) S. B. Pointing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA