Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity

Petroleum hydrocarbon contamination, plant identity and arbuscular mycorrhizal fungal (AMF) community determine assemblages of the AMF spore-associated microbes

(2016) Bachir Iffis et al.   ENVIRONMENTAL MICROBIOLOGY

The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales

(2016) Gian Maria Niccolò Benucci et al.   MICROBIAL ECOLOGY

Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development

(2016) Aurélie Deveau et al.   MYCORRHIZA

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat

(2016) Embriette R. Hyde et al.   mSystems

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Investigation on mineral composition and accumulation by popular edible mushroom common chanterelle (Cantharellus cibarius)

(2015) Małgorzata Drewnowska et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Metagenome sequence ofElaphomyces granulatusfrom sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and aProteobacteria-rich microbiome

(2015) C. Alisha Quandt et al.   ENVIRONMENTAL MICROBIOLOGY

Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi

(2015) Srisailam Marupakula et al.   ENVIRONMENTAL MICROBIOLOGY

Secondary Metabolites Control the Associated Bacterial Communities of Saprophytic Basidiomycotina Fungi

(2015) Maira Peres de Carvalho et al.   MICROBES AND ENVIRONMENTS

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

(2015) Franck O. P. Stefani et al.   PLoS One

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Bacteria associated with truffle-fruiting bodies contribute to truffle aroma

(2014) Richard Splivallo et al.   ENVIRONMENTAL MICROBIOLOGY

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Towards a holistic understanding of the beneficial interactions across thePopulusmicrobiome

(2014) Stéphane Hacquard et al.   NEW PHYTOLOGIST

Network Analysis Reveals Ecological Links between N-Fixing Bacteria and Wood-Decaying Fungi

(2014) Björn Hoppe et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

LotuS: an efficient and user-friendly OTU processing pipeline

(2014) Falk Hildebrand et al.   Microbiome

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Bacterial complexes of the fruiting bodies and hyphosphere of certain basidiomycetes

(2013) Yu. A. Zagriadskaia et al.   BIOLOGY BULLETIN

Identification of Household Bacterial Community and Analysis of Species Shared with Human Microbiome

(2013) Yoon-Seong Jeon et al.   CURRENT MICROBIOLOGY

Black truffle-associated bacterial communities during the development and maturation ofTuber melanosporumascocarps and putative functional roles

(2013) Sanjay Antony-Babu et al.   ENVIRONMENTAL MICROBIOLOGY

Biological characterization of various strains of Pseudomonas tolaasii that causes brown blotch disease

(2013) Yeong-Bae Yun et al.   Journal of the Korean Society for Applied Biological Chemistry

Different bacterial communities in ectomycorrhizae and surrounding soil

(2013) Unni Vik et al.   Scientific Reports

Diversity of cultivable bacteria associated with fruiting bodies of wild Himalayan Cantharellus spp.

(2012) Deepika Kumari et al.   ANNALS OF MICROBIOLOGY

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2012) S. Uroz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel probiotic candidates for humans isolated from raw fruits and vegetables

(2012) Beatrice Vitali et al.   FOOD MICROBIOLOGY

Detecting nonculturable bacteria in the active mycorrhizal zone of the pine mushroom Tricholoma matsutake

(2012) Ryota Kataoka et al.   JOURNAL OF MICROBIOLOGY

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest

(2012) Leho Tedersoo et al.   NEW PHYTOLOGIST

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quest for indigenous truffle helper prokaryotes

(2012) Milan Gryndler et al.   Environmental Microbiology Reports

Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample

(2011) Ivone Vaz-Moreira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Evaluation of indigenous potent mushroom growth promoting bacteria (MGPB) on Agaricus bisporus production

(2011) F. Zarenejad et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

New evidence for nitrogen fixation within the Italian white truffle Tuber magnatum

(2010) Elena Barbieri et al.   Fungal Biology

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Selection of Variovorax paradoxus-like bacteria in the mycosphere and the role of fungal-released compounds

(2010) F.G.H. Boersma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Selection of Sphingomonadaceae at the Base of Laccaria proxima and Russula exalbicans Fruiting Bodies

(2009) F. G. H. Boersma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats

(2009) Rashid Nazir et al.   FEMS MICROBIOLOGY ECOLOGY

Species-specific structural and functional diversity of bacterial communities in lichen symbioses

(2009) Martin Grube et al.   ISME Journal

Volatile C8 compounds and pseudomonads influence primordium formation of Agaricus bisporus

(2009) Ralph Noble et al.   MYCOLOGIA

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi

(2008) J. A. Warmink et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi

(2008) David J. Burke et al.   FEMS MICROBIOLOGY ECOLOGY

Bioprotective Leuconostoc strains against Listeria monocytogenes in fresh fruits and vegetables

(2008) R TRIAS et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Chemical Composition and Biological Properties of Portuguese Wild Mushrooms: A Comprehensive Study

(2008) Lillian Barros et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Comparison of the bacterial communities established on the mycorrhizae formed on Pinus thunbergii root tips by eight species of fungi

(2008) Ryota Kataoka et al.   PLANT AND SOIL