Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 118, Issue 51, Pages e2115899118
Publisher
Proceedings of the National Academy of Sciences
Online
2021-12-14
DOI
10.1073/pnas.2115899118
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV
- (2021) Vibhor Mishra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- 3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM
- (2021) Ali Punjani et al. JOURNAL OF STRUCTURAL BIOLOGY
- DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- (2021) Ruben Sanchez-Garcia et al. Communications Biology
- Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
- (2020) Jasenko Zivanov et al. IUCrJ
- Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism
- (2020) Nan Jiang et al. Nature Communications
- Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
- (2020) Kailash Ramlaul et al. JOURNAL OF STRUCTURAL BIOLOGY
- UCSF ChimeraX : Structure visualization for researchers, educators, and developers
- (2020) Eric F. Pettersen et al. PROTEIN SCIENCE
- RNA-directed DNA Methylation
- (2020) Robert M. Erdmann et al. PLoS Genetics
- Structure and function of virion RNA polymerase of a crAss-like phage
- (2020) Arina V. Drobysheva et al. NATURE
- Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning
- (2019) Sai Raghavendra Maddhuri Venkata Subramaniya et al. NATURE METHODS
- RNA-induced initiation of transcriptional silencing (RITS) complex structure and function
- (2019) Sonali Bhattacharjee et al. RNA Biology
- Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway
- (2019) Jasleen Singh et al. MOLECULAR CELL
- Titer estimation for quality control (TEQC) method: A practical approach for optimal production of protein complexes using the baculovirus expression vector system
- (2018) Tsuyoshi Imasaki et al. PLoS One
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- Trigger loop of RNA polymerase is a positional, not acid–base, catalyst for both transcription and proofreading
- (2017) Tatiana V. Mishanina et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional Evolution in Orthologous Cell-encoded RNA-dependent RNA Polymerases
- (2016) Xinlei Qian et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis
- (2015) Jixian Zhai et al. CELL
- Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex
- (2015) Lanfeng Wang et al. NATURE
- The I-TASSER Suite: protein structure and function prediction
- (2015) Jianyi Yang et al. NATURE METHODS
- RNA-mediated epigenetic regulation of gene expression
- (2015) Daniel Holoch et al. NATURE REVIEWS GENETICS
- Primer-Dependent and Primer-Independent Initiation of Double Stranded RNA Synthesis by Purified Arabidopsis RNA-Dependent RNA Polymerases RDR2 and RDR6
- (2015) Anthony Devert et al. PLoS One
- RNAi and Heterochromatin Assembly
- (2015) Robert Martienssen et al. Cold Spring Harbor Perspectives in Biology
- Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
- (2015) Todd Blevins et al. eLife
- Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme
- (2014) Ritwika S. Basu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Genome3D: exploiting structure to help users understand their sequences
- (2014) Tony E. Lewis et al. NUCLEIC ACIDS RESEARCH
- The Exosome and Trans-Acting Small Interfering RNAs Regulate Cuticular Wax Biosynthesis during Arabidopsis Inflorescence Stem Development
- (2014) Patricia Lam et al. PLANT PHYSIOLOGY
- Structural basis of transcription elongation
- (2012) Fuensanta W. Martinez-Rucobo et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- In Vitro Transcription Activities of Pol IV, Pol V, and RDR2 Reveal Coupling of Pol IV and RDR2 for dsRNA Synthesis in Plant RNA Silencing
- (2012) Jeremy R. Haag et al. MOLECULAR CELL
- The Bridge Helix of RNA Polymerase Acts as a Central Nanomechanical Switchboard for Coordinating Catalysis and Substrate Movement
- (2012) Robert O. J. Weinzierl ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Interaction of RNA Polymerase II Fork Loop 2 with Downstream Non-template DNA Regulates Transcription Elongation
- (2011) Maria L. Kireeva et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural basis of RNA polymerase II backtracking, arrest and reactivation
- (2011) Alan C. M. Cheung et al. NATURE
- SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV
- (2011) Julie A. Law et al. PLoS Genetics
- The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain
- (2010) Robert OJ Weinzierl BMC BIOLOGY
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications and possible losses before and after the divergence of major eukaryotic groups
- (2009) Jie Zong et al. GENE
- RNA polymerase V transcription guides ARGONAUTE4 to chromatin
- (2009) Andrzej T Wierzbicki et al. NATURE GENETICS
- Functional Divergence in the Growing Family of RNA Polymerases
- (2009) Robert Landick STRUCTURE
- Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
- (2008) Andrzej T. Wierzbicki et al. CELL
- Structural basis of transcription inhibition by α-amanitin and implications for RNA polymerase II translocation
- (2008) Florian Brueckner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Conserved themes in small-RNA-mediated transposon control
- (2008) Angélique Girard et al. TRENDS IN CELL BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More