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Title
RNA-mediated epigenetic regulation of gene expression
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 16, Issue 2, Pages 71-84
Publisher
Springer Nature
Online
2015-01-02
DOI
10.1038/nrg3863
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- (2014) Roberto Bonasio et al. Annual Review of Genetics
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- lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast
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- (2014) Ruby Yu et al. MOLECULAR CELL
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- (2014) Lianna M. Johnson et al. NATURE
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- (2014) Katharina Gapp et al. NATURE NEUROSCIENCE
- RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
- (2014) Marjori A. Matzke et al. NATURE REVIEWS GENETICS
- Transcriptional control of a whole chromosome: emerging models for dosage compensation
- (2014) Francesco Ferrari et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex
- (2014) E. D. Egan et al. RNA
- The SET Domain Proteins SUVH2 and SUVH9 Are Required for Pol V Occupancy at RNA-Directed DNA Methylation Loci
- (2014) Zhang-Wei Liu et al. PLoS Genetics
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- (2014) Scott P. Kallgren et al. PLoS Genetics
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- (2013) Nathan N. Lee et al. CELL
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- (2013) Ulf Andersson Ørom et al. CELL
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- (2013) Colin C. Conine et al. CELL
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- (2013) Edda G Schulz et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2013) Meetu Seth et al. DEVELOPMENTAL CELL
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- (2013) Christopher J. Wedeles et al. DEVELOPMENTAL CELL
- A Major Epigenetic Programming Mechanism Guided by piRNAs
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- Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
- (2013) Michael T. Y. Lam et al. NATURE
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- (2013) Julie A. Law et al. NATURE
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- (2013) Fan Lai et al. NATURE
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- (2013) Stephane E. Castel et al. NATURE REVIEWS GENETICS
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- (2013) H. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) Yunkun Dang et al. PLoS Genetics
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- (2010) Ulf Andersson Ørom et al. CELL
- Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells
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- piRNAs, transposon silencing, andDrosophilagermline development
- (2010) Jaspreet S. Khurana et al. JOURNAL OF CELL BIOLOGY
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- (2010) Vicki L. Chandler SCIENCE
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- The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation
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- Small RNAs as Guardians of the Genome
- (2009) Colin D. Malone et al. CELL
- NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation
- (2009) X.-J. He et al. GENES & DEVELOPMENT
- Involvement of the Spliceosomal U4 Small Nuclear RNA in Heterochromatic Gene Silencing at Fission Yeast Centromeres
- (2009) Madoka Chinen et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes
- (2009) Yanli Wang et al. NATURE
- Small RNAs in transcriptional gene silencing and genome defence
- (2009) Danesh Moazed NATURE
- RNA polymerase V transcription guides ARGONAUTE4 to chromatin
- (2009) Andrzej T Wierzbicki et al. NATURE GENETICS
- Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
- (2008) Andrzej T. Wierzbicki et al. CELL
- DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
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- (2008) S. Honda et al. MOLECULAR AND CELLULAR BIOLOGY
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- (2008) Mohammad R. Motamedi et al. MOLECULAR CELL
- A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
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- (2008) Partha P. Das et al. MOLECULAR CELL
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- An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
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- Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome
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- (2008) S. Guang et al. SCIENCE
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- (2008) Lianna M. Johnson et al. PLoS Genetics
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