Genome and systems biology of Melilotus albus provides insights into coumarins biosynthesis

The effect of developmental and environmental factors on secondary metabolites in medicinal plants

(2020) Yanqun Li et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A pharmacological review of dicoumarol: An old natural anticoagulant agent

(2020) Chong Sun et al.   PHARMACOLOGICAL RESEARCH

The genome of Cleistogenes songorica provides a blueprint for functional dissection of dimorphic flower differentiation and drought adaptability

(2020) Jiyu Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

A suite of complementary biocontrol traits allows a native consortium of root-associated bacteria to protect their host plant from a fungal sudden-wilt disease

(2019) Rakesh Santhanam et al.   MOLECULAR ECOLOGY

The Age of Coumarins in Plant–Microbe Interactions

(2019) Ioannis A Stringlis et al.   PLANT AND CELL PHYSIOLOGY

The water lily genome and the early evolution of flowering plants

(2019) Liangsheng Zhang et al.   NATURE

Genetic Improvement of Key Agronomic Traits in

(2018) Kai Luo et al.   CROP SCIENCE

Are Melilotus albus and M. officinalis conspecific?

(2018) Stephen Darbyshire et al.   GENETIC RESOURCES AND CROP EVOLUTION

Scopoletin 8-hydroxylase: a novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis

(2018) Joanna Siwinska et al.   JOURNAL OF EXPERIMENTAL BOTANY

Coumarin Content, Morphological Variation, and Molecular Phylogenetics of Melilotus

(2018) Jiyu Zhang et al.   MOLECULES

Scopoletin 8-Hydroxylase-Mediated Fraxetin Production is Crucial for Iron Mobilization

(2018) Huei-Hsuan Tsai et al.   PLANT PHYSIOLOGY

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Cross-species transferability of EST-SSR markers developed from the transcriptome of Melilotus and their application to population genetics research

(2017) Zhuanzhuan Yan et al.   Scientific Reports

Potential DNA barcodes for Melilotus species based on five single loci and their combinations

(2017) Fan Wu et al.   PLoS One

Transcriptomic profiling of Melilotus albus near-isogenic lines contrasting for coumarin content

(2017) Kai Luo et al.   Scientific Reports

Therapeutic potential of coumarins as antiviral agents

(2016) Mohd. Zaheen Hassan et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Analysis of genetic diversity and population structure in accessions of the genus Melilotus

(2016) Fan Wu et al.   INDUSTRIAL CROPS AND PRODUCTS

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Robust and scalable inference of population history from hundreds of unphased whole genomes

(2016) Jonathan Terhorst et al.   NATURE GENETICS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

Draft genome of the living fossil Ginkgo biloba

(2016) Rui Guan et al.   GigaScience

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Identification of protein coding regions in RNA transcripts

(2015) Shiyuyun Tang et al.   NUCLEIC ACIDS RESEARCH

HIV-1 Rev downregulates Tat expression and viral replication via modulation of NAD(P)H:quinine oxidoreductase 1 (NQO1)

(2015) Sneh Lata et al.   Nature Communications

Coumarin derivatives from Ainsliaea fragrans and their anticoagulant activity

(2015) Liang Lei et al.   Scientific Reports

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

(2015) Jose J. De Vega et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

2-Oxoglutarate-dependent dioxygenases in the biosynthesis of simple coumarins

(2014) Bun-Ichi Shimizu   Frontiers in Plant Science

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

New dicoumarol sodium compound: crystal structure, theoretical study and tumoricidal activity against osteoblast cancer cells

(2013) Sadia Rehman et al.   Chemistry Central Journal

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

Feruloyl-CoA 6'-Hydroxylase1-Dependent Coumarins Mediate Iron Acquisition from Alkaline Substrates in Arabidopsis

(2013) N. B. Schmid et al.   PLANT PHYSIOLOGY

Biomass use, production, feed efficiencies, and greenhouse gas emissions from global livestock systems

(2013) M. Herrero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Review on Natural Coumarin Lead Compounds for Their Pharmacological Activity

(2013) K. N. Venugopala et al.   Biomed Research International

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Solutions for a cultivated planet

(2011) Jonathan A. Foley et al.   NATURE

The UniProt-GO Annotation database in 2011

(2011) E. C. Dimmer et al.   NUCLEIC ACIDS RESEARCH

Downregulation of putative UDP-glucose: flavonoid 3-O-glucosyltransferase gene alters flower coloring in Phalaenopsis

(2011) Wen-Huei Chen et al.   PLANT CELL REPORTS

Global food demand and the sustainable intensification of agriculture

(2011) D. Tilman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Variation in coumarin content ofMelilotusspecies grown in South Australia

(2010) RM Nair et al.   NEW ZEALAND JOURNAL OF AGRICULTURAL RESEARCH

The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function

(2010) Jun-Jun Liu et al.   PLANT CELL REPORTS

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

A unified classification system for eukaryotic transposable elements should reflect their phylogeny

(2009) Ole Seberg et al.   NATURE REVIEWS GENETICS

Scopolin-hydrolyzing  -glucosidases in roots of Arabidopsis

(2009) Y. O. Ahn et al.   PLANT AND CELL PHYSIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY