dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data

Antimicrobial peptides and other peptide-like therapeutics as promising candidates to combat SARS-CoV-2

(2021) Masoumeh Sadat Mousavi Maleki et al.   Expert Review of Anti-Infective Therapy

Compelling Evidence for the Activity of Antiviral Peptides against SARS-CoV-2

(2021) Miray Tonk et al.   Viruses-Basel

AVPIden: a new scheme for identification and functional prediction of antiviral peptides based on machine learning approaches

(2021) Yuxuan Pang et al.   BRIEFINGS IN BIOINFORMATICS

Natural antimicrobial peptides as a source of new antiviral agents

(2021) Hovakim Zakaryan et al.   JOURNAL OF GENERAL VIROLOGY

Antimicrobial Peptides and Physical Activity: A Great Hope against COVID 19

(2021) Sonia Laneri et al.   Microorganisms

Accelerating antibiotic discovery through artificial intelligence

(2021) Marcelo C. R. Melo et al.   Communications Biology

Characterization and Identification of Natural Antimicrobial Peptides on Different Organisms

(2020) Chia-Ru Chung et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Isolation of antimicrobial peptides from different plant sources: Does a general extraction method exist?

(2020) Anna S. Barashkova et al.   Plant Methods

Antimicrobial Peptides: Classification, Design, Application and Research Progress in Multiple Fields

(2020) Yuchen Huan et al.   Frontiers in Microbiology

The Potential of Antiviral Peptides as COVID-19 Therapeutics

(2020) Arun Suria Karnan Mahendran et al.   Frontiers in Pharmacology

Large-scale mass spectrometry data combined with demographics analysis rapidly predicts methicillin resistance in Staphylococcus aureus

(2020) Zhuo Wang et al.   BRIEFINGS IN BIOINFORMATICS

Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies

(2020) Yuxuan Pang et al.   BRIEFINGS IN BIOINFORMATICS

In Silico Discovery of Antimicrobial Peptides as an Alternative to Control SARS-CoV-2

(2020) Yamil Liscano et al.   MOLECULES

The Antimicrobial Peptide Database provides a platform for decoding the design principles of naturally occurring antimicrobial peptides

(2019) Guangshun Wang   PROTEIN SCIENCE

Designing and optimizing new antimicrobial peptides: all targets are not the same

(2019) Adriana Barreto-Santamaría et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

DRAMP 2.0, an updated data repository of antimicrobial peptides

(2019) Xinyue Kang et al.   Scientific Data

Insilico Alpha-Helical Structural Recognition of Temporin Antimicrobial Peptides and Its Interactions with Middle East Respiratory Syndrome-Coronavirus

(2019) Sathish Kumar Marimuthu et al.   International Journal of Peptide Research and Therapeutics

Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance

(2019) Réka Spohn et al.   Nature Communications

The Amphibian Antimicrobial Peptide Temporin B Inhibits In Vitro Herpes Simplex Virus 1 Infection

(2018) M. E. Marcocci et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

AntiTbPdb: a knowledgebase of anti-tubercular peptides

(2018) Salman Sadullah Usmani et al.   Database-The Journal of Biological Databases and Curation

Cysmotif Searcher Pipeline for Antimicrobial Peptide Identification in Plant Transcriptomes

(2018) A. A. Shelenkov et al.   BIOCHEMISTRY-MOSCOW

dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data

(2018) Jhih-Hua Jhong et al.   NUCLEIC ACIDS RESEARCH

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications

(2018) Kai-Yao Huang et al.   NUCLEIC ACIDS RESEARCH

InverPep: A database of invertebrate antimicrobial peptides

(2017) Esteban A. Gómez et al.   Journal of Global Antimicrobial Resistance

THPdb: Database of FDA-approved peptide and protein therapeutics

(2017) Salman Sadullah Usmani et al.   PLoS One

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

(2016) Van-Minh Bui et al.   BMC GENOMICS

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines

(2016) Chien-Hsun Huang et al.   BMC Systems Biology

De Novo Transcriptome Analysis and Detection of Antimicrobial Peptides of the American Cockroach Periplaneta americana (Linnaeus)

(2016) In-Woo Kim et al.   PLoS One

A novel peptide with potent and broad-spectrum antiviral activities against multiple respiratory viruses

(2016) Hanjun Zhao et al.   Scientific Reports

A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs

(2015) Hui-Ju Kao et al.   BMC BIOINFORMATICS

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides: Table 1.

(2015) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

New peptide architectures through C–H activation stapling between tryptophan–phenylalanine/tyrosine residues

(2015) Lorena Mendive-Tapia et al.   Nature Communications

Novel Antimicrobial Peptides with High Anticancer Activity and Selectivity

(2015) Hung-Lun Chu et al.   PLoS One

Molecular tools for the construction of peptide-based materials

(2014) B. E. I. Ramakers et al.   CHEMICAL SOCIETY REVIEWS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

CancerPPD: a database of anticancer peptides and proteins

(2014) Atul Tyagi et al.   NUCLEIC ACIDS RESEARCH

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)

(2013) Peng Zhou et al.   BMC BIOINFORMATICS

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins

(2013) Min-Gang Su et al.   NUCLEIC ACIDS RESEARCH

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides

(2013) Ankur Gautam et al.   NUCLEIC ACIDS RESEARCH

The true cost of antimicrobial resistance

(2013) R. Smith et al.   BMJ-British Medical Journal

The Future of Peptide-based Drugs

(2012) David J. Craik et al.   Chemical Biology & Drug Design

Antimicrobial Peptides – Promising Alternatives to Conventional Antibiotics

(2011) Sylvia A. Baltzer et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

(2011) Ping Wang et al.   PLoS One

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS